Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30957.Seq
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55147| Best HMM Match : TPR_2 (HMM E-Value=1.8e-10)                 40   0.001
SB_42562| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.90 
SB_59454| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_42340| Best HMM Match : DnaJ (HMM E-Value=3.2e-32)                  29   4.8  

>SB_55147| Best HMM Match : TPR_2 (HMM E-Value=1.8e-10)
          Length = 559

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 31/91 (34%), Positives = 38/91 (41%), Gaps = 7/91 (7%)
 Frame = +2

Query: 257 EPESD---VELDMEGVIAPDQTDESQDMGDPNXXXXXXXXXXXXXXXXXAMRAFSGQ--- 418
           +PES+    ++D  GVI PD  DE   MGD +                       G    
Sbjct: 3   KPESEKGVFDIDQTGVIEPD-VDEPVPMGDDSIESPLASLVMTFWLSVTGREKSGGSDTL 61

Query: 419 -KYXEAINLYTAAIQLNPQSALLFAKRGQVY 508
               EAI L+T AI  NP SA LFAKR   +
Sbjct: 62  GNLEEAIKLFTDAIMKNPHSAPLFAKRASCF 92



 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 508 LKLXKPNACIKDCXHXLELNCXSGGRYKFPRGEH 609
           +++ KPNA I+DC    ++N  S   YK+    H
Sbjct: 93  IRMKKPNAAIRDCDKAAQINPDSAQIYKWRGRAH 126


>SB_42562| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 186

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 404 AFSGQKYXEAINLYTAAIQLNPQSALLFAKRGQV 505
           AF  QKY EA+ LYT A+  +  +   +  R Q+
Sbjct: 130 AFKQQKYEEAVKLYTQALNQDRTNTAFYTNRAQL 163


>SB_59454| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 285

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +2

Query: 404 AFSGQKYXEAINLYTAAIQLNPQSALLFAK 493
           AF+G  Y +A  LYT A++++P++    AK
Sbjct: 43  AFTGGHYQKAYELYTEALEIDPKNKSTNAK 72


>SB_42340| Best HMM Match : DnaJ (HMM E-Value=3.2e-32)
          Length = 264

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +2

Query: 404 AFSGQKYXEAINLYTAAIQLNPQSALLFAK 493
           AF+G  Y +A  LYT A++++P++    AK
Sbjct: 43  AFTGGHYQKAYELYTEALEIDPKNKSTNAK 72


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,696,137
Number of Sequences: 59808
Number of extensions: 295388
Number of successful extensions: 601
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)