Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30957.Seq
         (698 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83241-3|CAB05818.1|  422|Caenorhabditis elegans Hypothetical pr...    51   7e-07
Z81120-9|CAB03349.1|  422|Caenorhabditis elegans Hypothetical pr...    51   7e-07
Z73976-5|CAA98282.1|  283|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>Z83241-3|CAB05818.1|  422|Caenorhabditis elegans Hypothetical
           protein T12D8.8 protein.
          Length = 422

 Score = 51.2 bits (117), Expect = 7e-07
 Identities = 20/35 (57%), Positives = 26/35 (74%)
 Frame = +3

Query: 60  LKSFVEICKTQPQLLHHPQLAFFKDYLISLGVSLP 164
           LK FV +C+  P +LH P+  FFKDYL+SLG +LP
Sbjct: 7   LKQFVGMCQANPAVLHAPEFGFFKDYLVSLGATLP 41



 Score = 44.4 bits (100), Expect = 8e-05
 Identities = 27/77 (35%), Positives = 37/77 (48%)
 Frame = +2

Query: 275 ELDMEGVIAPDQTDESQDMGDPNXXXXXXXXXXXXXXXXXAMRAFSGQKYXEAINLYTAA 454
           ++D EGVI P++   +  MGD                   A  AFS   +  A+  +TAA
Sbjct: 83  KIDNEGVIEPEEA-VALPMGDSAKEATEDEIEKASEERGKAQEAFSNGDFDTALTHFTAA 141

Query: 455 IQLNPQSALLFAKRGQV 505
           I+ NP SA+L AKR  V
Sbjct: 142 IEANPGSAMLHAKRANV 158



 Score = 31.9 bits (69), Expect = 0.45
 Identities = 18/45 (40%), Positives = 24/45 (53%)
 Frame = +1

Query: 505 VLKLXKPNACIKDCXHXLELNCXSGGRYKFPRGEHIGSXGKFXES 639
           +LKL +P A I DC   + +N  S   YKF RG      GK+ E+
Sbjct: 159 LLKLKRPVAAIADCDKAISINPDSAQGYKF-RGRANRLLGKWVEA 202


>Z81120-9|CAB03349.1|  422|Caenorhabditis elegans Hypothetical
           protein T12D8.8 protein.
          Length = 422

 Score = 51.2 bits (117), Expect = 7e-07
 Identities = 20/35 (57%), Positives = 26/35 (74%)
 Frame = +3

Query: 60  LKSFVEICKTQPQLLHHPQLAFFKDYLISLGVSLP 164
           LK FV +C+  P +LH P+  FFKDYL+SLG +LP
Sbjct: 7   LKQFVGMCQANPAVLHAPEFGFFKDYLVSLGATLP 41



 Score = 44.4 bits (100), Expect = 8e-05
 Identities = 27/77 (35%), Positives = 37/77 (48%)
 Frame = +2

Query: 275 ELDMEGVIAPDQTDESQDMGDPNXXXXXXXXXXXXXXXXXAMRAFSGQKYXEAINLYTAA 454
           ++D EGVI P++   +  MGD                   A  AFS   +  A+  +TAA
Sbjct: 83  KIDNEGVIEPEEA-VALPMGDSAKEATEDEIEKASEERGKAQEAFSNGDFDTALTHFTAA 141

Query: 455 IQLNPQSALLFAKRGQV 505
           I+ NP SA+L AKR  V
Sbjct: 142 IEANPGSAMLHAKRANV 158



 Score = 31.9 bits (69), Expect = 0.45
 Identities = 18/45 (40%), Positives = 24/45 (53%)
 Frame = +1

Query: 505 VLKLXKPNACIKDCXHXLELNCXSGGRYKFPRGEHIGSXGKFXES 639
           +LKL +P A I DC   + +N  S   YKF RG      GK+ E+
Sbjct: 159 LLKLKRPVAAIADCDKAISINPDSAQGYKF-RGRANRLLGKWVEA 202


>Z73976-5|CAA98282.1|  283|Caenorhabditis elegans Hypothetical
           protein T07C12.9 protein.
          Length = 283

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +2

Query: 86  NTAATITPSTIGVF*GLSDISWCIIADRYFWC 181
           NTA  + P    ++ G+ + +WC    R F C
Sbjct: 208 NTAGAVKPGGYLIYGGIFEETWCSFGGRKFTC 239


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,257,747
Number of Sequences: 27780
Number of extensions: 225194
Number of successful extensions: 527
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)