Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30957.Seq
(698 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g17880.1 68416.m02278 tetratricoredoxin (TDX) identical to te... 59 3e-09
At4g22670.1 68417.m03272 tetratricopeptide repeat (TPR)-containi... 51 6e-07
At2g42810.1 68415.m05300 serine/threonine protein phosphatase, p... 39 0.003
At4g23570.2 68417.m03396 phosphatase-related low similarity to p... 34 0.10
At4g23570.1 68417.m03395 phosphatase-related low similarity to p... 34 0.10
At5g09420.1 68418.m01091 chloroplast outer membrane translocon s... 32 0.32
At4g11260.1 68417.m01822 phosphatase-related low similarity to p... 32 0.42
At1g12270.1 68414.m01419 stress-inducible protein, putative simi... 32 0.42
At1g62740.1 68414.m07081 stress-inducible protein, putative simi... 31 0.56
At4g12400.1 68417.m01960 stress-inducible protein, putative simi... 31 0.73
At4g08320.1 68417.m01373 tetratricopeptide repeat (TPR)-containi... 29 2.2
At1g04190.1 68414.m00409 tetratricopeptide repeat (TPR)-containi... 29 2.2
At1g56440.1 68414.m06491 serine/threonine protein phosphatase-re... 29 3.9
At1g68185.1 68414.m07789 ubiquitin-related similar to ubiquitin-... 28 5.2
>At3g17880.1 68416.m02278 tetratricoredoxin (TDX) identical to
tetratricoredoxin [Arabidopsis thaliana] GI:18041544;
similar to SP|Q42443 Thioredoxin H-type (TRX-H) (Phloem
sap 13 kDa protein-1) {Oryza sativa}; contains Pfam
profile: PF00085 Thioredoxin
Length = 380
Score = 58.8 bits (136), Expect = 3e-09
Identities = 33/82 (40%), Positives = 41/82 (50%)
Frame = +2
Query: 263 ESDVELDMEGVIAPDQTDESQDMGDPNXXXXXXXXXXXXXXXXXAMRAFSGQKYXEAINL 442
ESDVELD V+ PD + Q MGDP AM A S ++ EAI
Sbjct: 76 ESDVELDNSDVVEPDN-EPPQPMGDPTAEVTDENRDDAQSEKSKAMEAISDGRFDEAIEH 134
Query: 443 YTAAIQLNPQSALLFAKRGQVY 508
T A+ LNP SA+L+A R V+
Sbjct: 135 LTKAVMLNPTSAILYATRASVF 156
Score = 48.4 bits (110), Expect = 5e-06
Identities = 22/51 (43%), Positives = 31/51 (60%)
Frame = +3
Query: 39 NAEQLDQLKSFVEICKTQPQLLHHPQLAFFKDYLISLGVSLPTATFGAKDF 191
+A Q+ +L+ FVE K P +LH P L FFK+YL SLG +P +D+
Sbjct: 3 DAIQVAELRRFVEQLKLNPSILHDPSLVFFKEYLRSLGAQVPKIEKTERDY 53
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +1
Query: 508 LKLXKPNACIKDCXHXLELNCXSGGRYKFPRGEHIGSXGKFXESS 642
LK+ KPNA I+D L+ N S YK RG G++ E++
Sbjct: 157 LKVKKPNAAIRDANVALQFNSDSAKGYK-SRGMAKAMLGQWEEAA 200
>At4g22670.1 68417.m03272 tetratricopeptide repeat (TPR)-containing
protein similar to Hsc70-interacting protein (Hip) from
{Homo sapiens} SP|P50502, {Rattus norvegicus} SP|P50503;
contains Pfam profile PF00515: tetratricopeptide repeat
(TPR) domain
Length = 441
Score = 51.2 bits (117), Expect = 6e-07
Identities = 21/43 (48%), Positives = 31/43 (72%)
Frame = +3
Query: 39 NAEQLDQLKSFVEICKTQPQLLHHPQLAFFKDYLISLGVSLPT 167
++ +L +LK F++ CK+ P LL P L+FF+DYL SLG +PT
Sbjct: 2 DSTKLSELKVFIDQCKSDPSLLTTPSLSFFRDYLESLGAKIPT 44
Score = 49.2 bits (112), Expect = 3e-06
Identities = 31/82 (37%), Positives = 39/82 (47%)
Frame = +2
Query: 263 ESDVELDMEGVIAPDQTDESQDMGDPNXXXXXXXXXXXXXXXXXAMRAFSGQKYXEAINL 442
ESDVEL+ + + PD D Q MGD + AM A S + EAI
Sbjct: 88 ESDVELEGD-TVEPDN-DPPQKMGDSSVEVTDENREAAQEAKGKAMEALSEGNFDEAIEH 145
Query: 443 YTAAIQLNPQSALLFAKRGQVY 508
T AI LNP SA+++ R VY
Sbjct: 146 LTRAITLNPTSAIMYGNRASVY 167
Score = 31.9 bits (69), Expect = 0.42
Identities = 18/45 (40%), Positives = 25/45 (55%)
Frame = +1
Query: 508 LKLXKPNACIKDCXHXLELNCXSGGRYKFPRGEHIGSXGKFXESS 642
+KL KPNA I+D LE+N S YK RG G++ E++
Sbjct: 168 IKLKKPNAAIRDANAALEINPDSAKGYK-SRGMARAMLGEWAEAA 211
>At2g42810.1 68415.m05300 serine/threonine protein phosphatase,
putative similar to SP|P53042 Serine/threonine protein
phosphatase 5 (EC 3.1.3.16) (PP5) (Protein phosphatase
T) (PPT) {Rattus norvegicus}; contains Pfam profiles
PF00149: Ser/Thr protein phosphatase, PF00515: TPR
Domain
Length = 484
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/34 (52%), Positives = 23/34 (67%)
Frame = +2
Query: 395 AMRAFSGQKYXEAINLYTAAIQLNPQSALLFAKR 496
A AF G KY AI+LYT AI+LN +A+ +A R
Sbjct: 20 ANEAFKGHKYSSAIDLYTKAIELNSNNAVYWANR 53
>At4g23570.2 68417.m03396 phosphatase-related low similarity to
phosphoprotein phosphatase [Mus musculus] GI:567040;
contains Pfam profiles PF00515: TPR Domain, PF05002: SGS
domain, PF04969: CS domain
Length = 350
Score = 33.9 bits (74), Expect = 0.10
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +2
Query: 395 AMRAFSGQKYXEAINLYTAAIQLNPQSALLFAKRGQVY 508
A AF + A++LY+ AI L+P A FA R Q Y
Sbjct: 9 AKEAFVDDDFDVAVDLYSKAIDLDPNCAEFFADRAQAY 46
>At4g23570.1 68417.m03395 phosphatase-related low similarity to
phosphoprotein phosphatase [Mus musculus] GI:567040;
contains Pfam profiles PF00515: TPR Domain, PF05002: SGS
domain, PF04969: CS domain
Length = 350
Score = 33.9 bits (74), Expect = 0.10
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +2
Query: 395 AMRAFSGQKYXEAINLYTAAIQLNPQSALLFAKRGQVY 508
A AF + A++LY+ AI L+P A FA R Q Y
Sbjct: 9 AKEAFVDDDFDVAVDLYSKAIDLDPNCAEFFADRAQAY 46
>At5g09420.1 68418.m01091 chloroplast outer membrane translocon
subunit, putative similar to component of chloroplast
outer membrane translocon Toc64 [Pisum sativum]
GI:7453538; contains Pfam profiles PF01425: Amidase,
PF00515: TPR Domain
Length = 603
Score = 32.3 bits (70), Expect = 0.32
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +2
Query: 404 AFSGQKYXEAINLYTAAIQLNPQSALLFAKRGQVY 508
A+ G+++ +A+N YT AI+LN +A + R +
Sbjct: 498 AYKGKQWNKAVNFYTEAIKLNGANATYYCNRAAAF 532
>At4g11260.1 68417.m01822 phosphatase-related low similarity to
protein phosphatase T [Saccharomyces cerevisiae]
GI:897806; contains Pfam profiles PF00515: TPR Domain,
PF05002: SGS domain, PF04969: CS domain
Length = 358
Score = 31.9 bits (69), Expect = 0.42
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +2
Query: 395 AMRAFSGQKYXEAINLYTAAIQLNPQSALLFAKRGQ 502
A AF + A++LY+ AI L+P A FA R Q
Sbjct: 9 AKEAFLDDDFDVAVDLYSKAIDLDPNCAAFFADRAQ 44
>At1g12270.1 68414.m01419 stress-inducible protein, putative similar
to sti (stress inducible protein) [Glycine max]
GI:872116; contains Pfam profile PF00515 TPR Domain
Length = 572
Score = 31.9 bits (69), Expect = 0.42
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +2
Query: 407 FSGQKYXEAINLYTAAIQLNPQSALLFAKRGQVY 508
F QKY EAI YT AI+ NP ++ R Y
Sbjct: 394 FKEQKYPEAIKHYTEAIKRNPNDHKAYSNRAASY 427
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 404 AFSGQKYXEAINLYTAAIQLNPQSALLFAKRGQVY 508
AFS + AIN +T AI L P + +LF+ R +
Sbjct: 12 AFSSGDFTTAINHFTEAIALAPTNHVLFSNRSAAH 46
>At1g62740.1 68414.m07081 stress-inducible protein, putative similar
to sti (stress inducible protein) [Glycine max]
GI:872116; contains Pfam profile PF00515 TPR Domain
Length = 571
Score = 31.5 bits (68), Expect = 0.56
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 407 FSGQKYXEAINLYTAAIQLNPQSALLFAKRGQVY 508
F QKY +A+ YT AI+ NP+ ++ R Y
Sbjct: 393 FKEQKYPDAVRHYTEAIKRNPKDPRAYSNRAACY 426
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 404 AFSGQKYXEAINLYTAAIQLNPQSALLFAKRGQVY 508
AFS + A+N +T AI L P + +LF+ R +
Sbjct: 12 AFSSGDFNSAVNHFTDAINLTPTNHVLFSNRSAAH 46
>At4g12400.1 68417.m01960 stress-inducible protein, putative similar
to sti (stress inducible protein) [Glycine max]
GI:872116; contains Pfam profile PF00515 TPR Domain
Length = 530
Score = 31.1 bits (67), Expect = 0.73
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 407 FSGQKYXEAINLYTAAIQLNPQSALLFAKRGQVY 508
F QKY EA+ Y+ AI+ NP ++ R Y
Sbjct: 380 FKEQKYPEAVKHYSEAIKRNPNDVRAYSNRAACY 413
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 404 AFSGQKYXEAINLYTAAIQLNPQSALLFAKRGQVY 508
AFS Y AI +T AI L+P + +L++ R Y
Sbjct: 12 AFSSGDYATAITHFTEAINLSPTNHILYSNRSASY 46
>At4g08320.1 68417.m01373 tetratricopeptide repeat (TPR)-containing
protein glutamine-rich tetratricopeptide repeat (TPR)
containing protein (SGT) - Rattus
norvegicus,PID:e1285298 (SP|O70593); contains Pfam
profile PF00515 TPR Domain
Length = 426
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +2
Query: 401 RAFSGQKYXEAINLYTAAIQLNPQSALLFAKRGQVY 508
+A Y EA+ LY+ AI L ++A+ + R Y
Sbjct: 184 KAMQSNLYLEAVELYSFAIALTDKNAVFYCNRAAAY 219
>At1g04190.1 68414.m00409 tetratricopeptide repeat (TPR)-containing
protein low similarity to protein antigen LmSTI1
[Leishmania major] GI:1698880; contains Pfam profile
PF00515 TPR Domain; EST gb|Z47802 and gb|Z48402 come
from this gene
Length = 328
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 407 FSGQKYXEAINLYTAAIQLNPQSALLFAKRGQVY 508
F + +A LYT AI+L+P +A L++ R +
Sbjct: 26 FKAGNFLKAAALYTQAIKLDPSNATLYSNRAAAF 59
>At1g56440.1 68414.m06491 serine/threonine protein
phosphatase-related similar to SP|Q60676
Serine/threonine protein phosphatase 5 (EC 3.1.3.16)
(PP5) (Protein phosphatase T) (PPT) Mus musculus,
Tetratricopeptide Repeats Of Protein Phosphatase 5 [Homo
sapiens] GI:3212250; contains Pfam profile: PF00515: TPR
Domain
Length = 476
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +2
Query: 407 FSGQKYXEAINLYTAAIQLNPQSALLFAKRGQVY 508
F +K+ EAI+ Y+ +I L+P +A+ +A R Y
Sbjct: 95 FKQKKFNEAIDCYSRSIALSP-NAVTYANRAMAY 127
>At1g68185.1 68414.m07789 ubiquitin-related similar to
ubiquitin-like protein smt3/pmt3 SP:O13351 from [Fission
yeast]
Length = 215
Score = 28.3 bits (60), Expect = 5.2
Identities = 16/74 (21%), Positives = 29/74 (39%)
Frame = +2
Query: 254 KEPESDVELDMEGVIAPDQTDESQDMGDPNXXXXXXXXXXXXXXXXXAMRAFSGQKYXEA 433
+E E + ++E P +Q +P +R F+ +K+
Sbjct: 108 QEVEESAKREVEESRNPSSETAAQLPSEPTNDRAKIVITIQDKDGQKTLRVFADEKFERV 167
Query: 434 INLYTAAIQLNPQS 475
I LYT +L+PQ+
Sbjct: 168 IKLYTDKAKLDPQN 181
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,487,591
Number of Sequences: 28952
Number of extensions: 209632
Number of successful extensions: 469
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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