Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30952.Seq
         (698 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g18640.2 68414.m02324 3-phosphoserine phosphatase (PSP) nearl...   103   1e-22
At1g18640.1 68414.m02323 3-phosphoserine phosphatase (PSP) nearl...   103   1e-22
At3g24650.1 68416.m03095 abscisic acid-insensitive protein 3 (AB...    30   1.3  
At2g30340.1 68415.m03692 LOB domain protein 13 / lateral organ b...    30   1.3  
At1g59660.1 68414.m06710 nucleoporin family protein contains Pfa...    29   2.2  
At3g63140.1 68416.m07091 mRNA-binding protein, putative similar ...    29   3.0  
At5g25265.1 68418.m02995 expressed protein                             29   3.9  
At5g58410.1 68418.m07314 expressed protein contains similarity t...    28   5.2  
At3g46400.1 68416.m05030 leucine-rich repeat protein kinase, put...    28   5.2  
At1g27960.1 68414.m03425 expressed protein contains Pfam profile...    28   5.2  
At1g12140.1 68414.m01406 flavin-containing monooxygenase family ...    28   5.2  
At4g33520.3 68417.m04762 metal-transporting P-type ATPase, putat...    28   6.8  
At3g05370.1 68416.m00586 disease resistance family protein conta...    28   6.8  
At5g07260.1 68418.m00828 homeobox protein-related contains weak ...    27   9.0  
At3g08670.1 68416.m01007 expressed protein                             27   9.0  

>At1g18640.2 68414.m02324 3-phosphoserine phosphatase (PSP) nearly
           identical to 3-phosphoserine phosphatase GI:3759177 from
           [Arabidopsis thaliana]
          Length = 295

 Score =  103 bits (247), Expect = 1e-22
 Identities = 53/129 (41%), Positives = 76/129 (58%)
 Frame = +1

Query: 187 AVRDVEDALTGVDQRDVAPTDCPELFRTADCVCFDVDSTVIQDEGIDELAKFCGKGDEVK 366
           +V+  E +  G +   V   +  +L+R+ + VCFDVDSTV  DEGIDELA+FCG G  V 
Sbjct: 55  SVQPHELSTLGHEGNIVPSKEILDLWRSVEAVCFDVDSTVCVDEGIDELAEFCGAGKAVA 114

Query: 367 RLTAEAMGGNMTFQEALKKRLDIIRPNVGQIREFIXKFPVRLTPGITG**KSYTKEESSY 546
             TA AMGG++ F+EAL  RL + +P++ ++ E++ K P RL+PGI    K         
Sbjct: 115 EWTARAMGGSVPFEEALAARLSLFKPSLSKVEEYLDKRPPRLSPGIEELVKKLRANNIDV 174

Query: 547 I*FRGGFXE 573
               GGF +
Sbjct: 175 YLISGGFRQ 183


>At1g18640.1 68414.m02323 3-phosphoserine phosphatase (PSP) nearly
           identical to 3-phosphoserine phosphatase GI:3759177 from
           [Arabidopsis thaliana]
          Length = 295

 Score =  103 bits (247), Expect = 1e-22
 Identities = 53/129 (41%), Positives = 76/129 (58%)
 Frame = +1

Query: 187 AVRDVEDALTGVDQRDVAPTDCPELFRTADCVCFDVDSTVIQDEGIDELAKFCGKGDEVK 366
           +V+  E +  G +   V   +  +L+R+ + VCFDVDSTV  DEGIDELA+FCG G  V 
Sbjct: 55  SVQPHELSTLGHEGNIVPSKEILDLWRSVEAVCFDVDSTVCVDEGIDELAEFCGAGKAVA 114

Query: 367 RLTAEAMGGNMTFQEALKKRLDIIRPNVGQIREFIXKFPVRLTPGITG**KSYTKEESSY 546
             TA AMGG++ F+EAL  RL + +P++ ++ E++ K P RL+PGI    K         
Sbjct: 115 EWTARAMGGSVPFEEALAARLSLFKPSLSKVEEYLDKRPPRLSPGIEELVKKLRANNIDV 174

Query: 547 I*FRGGFXE 573
               GGF +
Sbjct: 175 YLISGGFRQ 183


>At3g24650.1 68416.m03095 abscisic acid-insensitive protein 3 (ABI3)
           identical to abscisic acid-insensitive protein 3
           GI:16146 SP:Q01593 from [Arabidopsis thaliana], (Plant
           Cell 4 (10), 1251-1261 (1992))
          Length = 720

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = -1

Query: 389 PIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAVLNNSGQ 249
           P  S+ S  ++SP P N   SS  SS     STS     A+L + G+
Sbjct: 80  PCMSSSSSSSTSPAPVNAIVSSASSSSAASSSTSSAASWAILRSDGE 126


>At2g30340.1 68415.m03692 LOB domain protein 13 / lateral organ
           boundaries domain protein 13 (LBD13) identical to LOB
           DOMAIN 13 [Arabidopsis thaliana] GI:17227158 SP|Q9AT61
          Length = 268

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = -1

Query: 392 PPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSA 270
           PP      LL+S P P      S+PS  M V S+S    SA
Sbjct: 199 PPTPRPPRLLSSQPAPPPTPPVSLPSPSMVVSSSSSSNSSA 239


>At1g59660.1 68414.m06710 nucleoporin family protein contains Pfam
           profiles: PF04096 nucleoporin autopeptidase, PF03093
           nucleoporin FG repeat family
          Length = 997

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
 Frame = -1

Query: 359 SSPFPQNLASSSMPSSCMTVESTSKQ--TQSAVLNNSGQSVGATSR*STPVRASSTSRTA 186
           S P   +    + PS   TV +T+    + S++  N+ Q +G++   STP   S+   + 
Sbjct: 444 SQPTTPSFGQPTTPSFRSTVSNTTSVFGSSSSLTTNTSQPLGSSIFGSTPAHGSTPGFSI 503

Query: 185 GCFSN 171
           G F+N
Sbjct: 504 GGFNN 508


>At3g63140.1 68416.m07091 mRNA-binding protein, putative similar to
           mRNA binding protein precursor (GI:26453355)
           [Lycopersicon esculentum]
          Length = 406

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
 Frame = -1

Query: 440 LMMSSLFFKASW-----NVILPPIASAVSLLTSSPFPQNLASSSMPSSCMTVES--TSKQ 282
           L  SSLFF +       N+++PP     SL +SS    +L+SSS  SS +   S  TS++
Sbjct: 4   LSSSSLFFSSKTTSPISNLLIPPSLHRFSLPSSSSSFSSLSSSSSSSSSLLTFSLRTSRR 63

Query: 281 TQSAVLNNSGQSVG 240
                      SVG
Sbjct: 64  LSPQKFTVKASSVG 77


>At5g25265.1 68418.m02995 expressed protein
          Length = 366

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = -3

Query: 231 TLIDTSESVFNVAYCRLLFKL*RAISVASSPSNETIMIEFTSIL 100
           T +  S+SV+N   CR+++   + I  ++ P +E  M  FT IL
Sbjct: 72  TAVTASDSVYNTWQCRVMYYWFKKIQASAGPGSE--MGGFTRIL 113


>At5g58410.1 68418.m07314 expressed protein contains similarity to
           hypothetical proteins
          Length = 1873

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +2

Query: 119 IIIVSLLGEEATEMALYSLKSNLQYATLKTLSLVSISVMSPQQTVRS 259
           +I+V+    E  + + +SLKS  Q ATL T  L SI ++  +  + S
Sbjct: 831 VIVVAKFAAEVIDGSFFSLKSLSQDATLLTTVLSSIFIIDLENRMTS 877


>At3g46400.1 68416.m05030 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 883

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = -1

Query: 425 LFFKASWNVILPPIASAVSLLTSSPFPQNLASSSMPSSCMTVEST 291
           L  K + N  LPP+ +A+ + T   FPQ+  +    S+   ++ T
Sbjct: 333 LELKRTQNSTLPPLLTAIEVFTVIDFPQSKTNEDDVSAIKNIKDT 377


>At1g27960.1 68414.m03425 expressed protein contains Pfam profile
           PF04146: YT521-B-like family
          Length = 539

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = +1

Query: 253 PELFRTADCVCFDVDSTVIQDEGIDELAKFCGKGDEVKRLTAEAMGGN 396
           P    T      + D +V+QD+ I     FCG+G E   + A+    N
Sbjct: 12  PPTTTTGSFTGLNTDQSVLQDQDIVSSRPFCGQGTESFHIGADTPRSN 59


>At1g12140.1 68414.m01406 flavin-containing monooxygenase family
           protein / FMO family protein similar to
           flavin-containing monooxygenase [Cavia porcellus]
           GI:191259; contains Pfam profile PF00743: Flavin-binding
           monooxygenase-like
          Length = 459

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +3

Query: 399 DIPGSLEEETGHHQA*RRSDQRIHXEISS*TNSWYYRLVKELHERGVIVY 548
           DI G  +E    H A R +  + + ++    N W + +++ +HE G IV+
Sbjct: 223 DITGVAKEV---HIASRSNPSKTYSKLPGSNNLWLHSMIESVHEDGTIVF 269


>At4g33520.3 68417.m04762 metal-transporting P-type ATPase, putative
            (PAA1) nearly identical to gi:2668492; contains Pfam
            heavy-metal-associated domain PF00403
          Length = 949

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 22/81 (27%), Positives = 36/81 (44%)
 Frame = -1

Query: 506  VIPGVSLTGNFXMNSLI*PTLGLMMSSLFFKASWNVILPPIASAVSLLTSSPFPQNLASS 327
            V+ G  LT       L   T+  +  +L++   +N++  PIA+ V L    P    + + 
Sbjct: 839  VLMGNRLTQLLDAMELSRQTMKTVKQNLWWAFGYNIVRIPIAAGVLL----PLTGTMLTP 894

Query: 326  SMPSSCMTVESTSKQTQSAVL 264
            SM  + M V S    T S +L
Sbjct: 895  SMAGALMGVSSLGVMTNSLLL 915


>At3g05370.1 68416.m00586 disease resistance family protein contains
           leucine rich-repeat domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Cf-2 disease resistance
           protein GB:AAC15780 from [Lycopersicon pimpinellifolium]
          Length = 860

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 19/73 (26%), Positives = 33/73 (45%)
 Frame = +1

Query: 211 LTGVDQRDVAPTDCPELFRTADCVCFDVDSTVIQDEGIDELAKFCGKGDEVKRLTAEAMG 390
           LTG D  D   ++ P + +  +   F VDS  I ++G++   K   + ++V   +     
Sbjct: 622 LTGEDG-DFRLSEAPYMGKVLNATAFFVDSMEIVNKGVETEFKRINEENKVINFSGNRFS 680

Query: 391 GNMTFQEALKKRL 429
           GN+     L K L
Sbjct: 681 GNIPESIGLLKEL 693


>At5g07260.1 68418.m00828 homeobox protein-related contains weak
           similarity to Homeobox protein FWA (Swiss-Prot:Q9FVI6)
           [Arabidopsis thaliana]
          Length = 541

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = -3

Query: 405 ECHIAAHCFRRQSFNLVSFPAELGQFIDAFI 313
           EC + A C+ +    +V+ P ELG +++  +
Sbjct: 496 ECFVTASCYVKADQTMVTSPNELGSYMENMV 526


>At3g08670.1 68416.m01007 expressed protein 
          Length = 567

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = -1

Query: 347 PQNLASSSMPSSCMTVES--TSKQTQSAVLNNSGQSVGATSR*STPVRASSTS 195
           P   +S + PS   +  S  TS ++ S++LN S  SV +  R S+P   SS+S
Sbjct: 151 PARSSSVTRPSISTSQYSSFTSGRSPSSILNTSSASVSSYIRPSSPSSRSSSS 203


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,812,087
Number of Sequences: 28952
Number of extensions: 269537
Number of successful extensions: 819
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)