Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30951.Seq
         (547 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein S16|Sc...    94   1e-20
SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein S16|Schizosa...    94   1e-20
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc...    27   1.8  
SPBC36.01c |||spermidine family transporter |Schizosaccharomyces...    26   3.2  
SPBC36.02c |||spermidine family transporter |Schizosaccharomyces...    26   3.2  
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce...    26   4.2  
SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomy...    26   4.2  
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha...    26   4.2  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    25   5.5  
SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    25   9.6  
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    25   9.6  
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc...    25   9.6  

>SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score = 94.3 bits (224), Expect = 1e-20
 Identities = 49/100 (49%), Positives = 65/100 (65%)
 Frame = +1

Query: 76  AVAYCKRGHGMLRVNGRPLDLVEXRLLQYKLQEPIPFARQGKILYG*XQSDSXXWWSCST 255
           AVA+CK G G+++VNG PL LV+  +L+ K+ EPI  A   K      +         S 
Sbjct: 15  AVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGVDIRVRVSGGGHVSQ 74

Query: 256 VYAIRQAISKALXAFYQKYVDEASKKEIKDILVQYDRSLL 375
           +YAIRQAISKA+ A+YQK+VDE SK E+K  L+ YDR+LL
Sbjct: 75  IYAIRQAISKAIVAYYQKFVDEHSKAELKKALITYDRTLL 114



 Score = 40.3 bits (90), Expect = 2e-04
 Identities = 18/23 (78%), Positives = 18/23 (78%)
 Frame = +3

Query: 384 PRRCEPKKXGGPGARAXYQKSYR 452
           PRR EPKK GG GARA  QKSYR
Sbjct: 118 PRRMEPKKFGGHGARARQQKSYR 140


>SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 140

 Score = 94.3 bits (224), Expect = 1e-20
 Identities = 49/100 (49%), Positives = 65/100 (65%)
 Frame = +1

Query: 76  AVAYCKRGHGMLRVNGRPLDLVEXRLLQYKLQEPIPFARQGKILYG*XQSDSXXWWSCST 255
           AVA+CK G G+++VNG PL LV+  +L+ K+ EPI  A   K      +         S 
Sbjct: 15  AVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGVDIRVRVSGGGHVSQ 74

Query: 256 VYAIRQAISKALXAFYQKYVDEASKKEIKDILVQYDRSLL 375
           +YAIRQAISKA+ A+YQK+VDE SK E+K  L+ YDR+LL
Sbjct: 75  IYAIRQAISKAIVAYYQKFVDEHSKAELKKALITYDRTLL 114



 Score = 40.3 bits (90), Expect = 2e-04
 Identities = 18/23 (78%), Positives = 18/23 (78%)
 Frame = +3

Query: 384 PRRCEPKKXGGPGARAXYQKSYR 452
           PRR EPKK GG GARA  QKSYR
Sbjct: 118 PRRMEPKKFGGHGARARQQKSYR 140


>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
           Prp22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1168

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
 Frame = +3

Query: 18  TVSXSQARPKYSDVRKPPTRSCVLQAWSWNAACKRAPIGLG*AQTAAV--QTSGTYPFCS 191
           T+S  Q R    DVR    R    +  SW  A + A I  G   T ++  Q  G  P   
Sbjct: 456 TMSNPQDRKFAQDVRDSAARQLTSETPSWRQATRNANISYGKRTTLSMKEQREG-LPVFK 514

Query: 192 ARKNSLWLXSE*QXXVVV 245
            RK  L   S+ Q  V++
Sbjct: 515 LRKQFLEAVSKNQILVLL 532


>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 580

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -1

Query: 73  VGGFLTSEYLGRAW 32
           VGGFLT  YLG  W
Sbjct: 282 VGGFLTKSYLGWRW 295


>SPBC36.02c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -1

Query: 73  VGGFLTSEYLGRAW 32
           VGGFLT  YLG  W
Sbjct: 279 VGGFLTKSYLGWRW 292


>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 576

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -1

Query: 73  VGGFLTSEYLGRAW 32
           +GGFLT  YLG  W
Sbjct: 278 IGGFLTKSYLGWRW 291


>SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 308

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 152 CCSTNFRNLSLLLGKEK 202
           CC TN+ +LSLL  K K
Sbjct: 292 CCETNYNHLSLLREKTK 308


>SPAC13G7.04c |mac1||membrane anchored protein Mac1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 756

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = -1

Query: 223 SDXNHREFFLAEQKG*VPEVCTAAVXAQPSPMGARLHAAFHDHACNTQLR 74
           S+     FF  E +  V +  T +V  +  P  AR  AA H +A +TQLR
Sbjct: 356 SEGTDSRFFDVENQVSVAQ--TPSVKPEMFPKTARPFAAIHANASSTQLR 403


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
           Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = -2

Query: 312 IFLVEXXQSL*NSLSDSVNCATXPPPXTVTLXSTIENFSLPSK 184
           +FL +  ++  +S+++  +     PP  V    T+ NFS P +
Sbjct: 701 VFLSKSPENYLSSINNGHHALNDNPPSQVNFSETLVNFSQPPR 743


>SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +2

Query: 8   RRQDREXIPGPSQVFGRKKTAHPQLRIASVVMECCV 115
           R+++++     +Q+    KTA+ +L I S  + CC+
Sbjct: 297 RKENQDFDDQSTQILNHIKTAYYELTIISKQVLCCI 332


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +3

Query: 45  KYSDVRKPPTRSCV 86
           KY D   PP+RSCV
Sbjct: 370 KYFDFTNPPSRSCV 383


>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 9/25 (36%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +1

Query: 442 NLTVKPSRKPSGGIVAASCCH-CVS 513
           N+ VKP+  P+  +    CCH C++
Sbjct: 569 NVIVKPALNPAERMTVRICCHDCIN 593


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,069,832
Number of Sequences: 5004
Number of extensions: 35666
Number of successful extensions: 109
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)