Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30951.Seq
(547 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0152 - 1168928-1169377 101 4e-22
11_01_0155 - 1287003-1287452 101 4e-22
07_03_1689 + 28710936-28711129,28711283-28711341,28711858-287118... 29 3.2
11_04_0272 - 15631598-15631898,15633162-15633291,15636394-156365... 28 4.2
05_04_0101 - 18003528-18003655,18003951-18003997,18004046-180040... 28 5.6
07_03_0687 - 20698778-20700029,20700815-20700819 27 7.4
10_08_0482 + 18218163-18218362,18220388-18220446,18223027-182230... 27 9.8
10_08_0478 + 18192636-18192784,18192991-18193052,18193381-181934... 27 9.8
07_01_0008 - 56178-57095 27 9.8
>12_01_0152 - 1168928-1169377
Length = 149
Score = 101 bits (242), Expect = 4e-22
Identities = 50/100 (50%), Positives = 68/100 (68%)
Frame = +1
Query: 76 AVAYCKRGHGMLRVNGRPLDLVEXRLLQYKLQEPIPFARQGKILYG*XQSDSXXWWSCST 255
AV+YCK G G+++VNG P++L+ +L+ K EPI A + + + S
Sbjct: 24 AVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRFKDIDMRIRVRGGGKTSQ 83
Query: 256 VYAIRQAISKALXAFYQKYVDEASKKEIKDILVQYDRSLL 375
+YAIRQAI+KAL A+YQKYVDEASKKE+KDI +YDR+LL
Sbjct: 84 IYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLL 123
Score = 46.0 bits (104), Expect = 2e-05
Identities = 19/23 (82%), Positives = 20/23 (86%)
Frame = +3
Query: 384 PRRCEPKKXGGPGARAXYQKSYR 452
PRRCEPKK GG GARA +QKSYR
Sbjct: 127 PRRCEPKKFGGRGARARFQKSYR 149
>11_01_0155 - 1287003-1287452
Length = 149
Score = 101 bits (242), Expect = 4e-22
Identities = 50/100 (50%), Positives = 68/100 (68%)
Frame = +1
Query: 76 AVAYCKRGHGMLRVNGRPLDLVEXRLLQYKLQEPIPFARQGKILYG*XQSDSXXWWSCST 255
AV+YCK G G+++VNG P++L+ +L+ K EPI A + + + S
Sbjct: 24 AVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRFKDIDMRIRVRGGGKTSQ 83
Query: 256 VYAIRQAISKALXAFYQKYVDEASKKEIKDILVQYDRSLL 375
+YAIRQAI+KAL A+YQKYVDEASKKE+KDI +YDR+LL
Sbjct: 84 IYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLL 123
Score = 46.0 bits (104), Expect = 2e-05
Identities = 19/23 (82%), Positives = 20/23 (86%)
Frame = +3
Query: 384 PRRCEPKKXGGPGARAXYQKSYR 452
PRRCEPKK GG GARA +QKSYR
Sbjct: 127 PRRCEPKKFGGRGARARFQKSYR 149
>07_03_1689 +
28710936-28711129,28711283-28711341,28711858-28711892,
28712123-28712226,28712325-28712397,28712495-28712553,
28712656-28712721,28712815-28712898,28712995-28713059,
28713152-28713342,28713522-28713612,28714076-28714134,
28714732-28714872,28715214-28715321
Length = 442
Score = 28.7 bits (61), Expect = 3.2
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -2
Query: 114 TQHSMTTLAIRNCGWAVFLRPNTWDGPGM 28
T SMT +A +N WA + P W+ P M
Sbjct: 222 TWKSMTDIADKNNKWASYAGPGGWNDPDM 250
>11_04_0272 -
15631598-15631898,15633162-15633291,15636394-15636544,
15636632-15636730,15636912-15637063,15637079-15637301
Length = 351
Score = 28.3 bits (60), Expect = 4.2
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = +1
Query: 220 QSDSXXWWSC-STVYAIRQAISKALX--AFYQKYVDEASKKEIKDIL 351
QS + WW Y+ R +I+ L AFY+KY E+ K+ K+ L
Sbjct: 24 QSSAFEWWDAHKKSYSERISITWELFKEAFYKKYFPESVKRMKKEFL 70
>05_04_0101 -
18003528-18003655,18003951-18003997,18004046-18004077,
18004316-18004453,18004579-18004619,18004967-18005105,
18010981-18011057,18011804-18011858,18012976-18013021,
18013099-18013187,18013304-18013417
Length = 301
Score = 27.9 bits (59), Expect = 5.6
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +3
Query: 12 GKTVSXSQARPKYSDVRKPPTR 77
G TV+ +A PK DVR PP R
Sbjct: 116 GTTVAVDRATPKDEDVRHPPRR 137
>07_03_0687 - 20698778-20700029,20700815-20700819
Length = 418
Score = 27.5 bits (58), Expect = 7.4
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -1
Query: 76 RVGGFLTSEYLGRAWDXLTVLPPAA 2
RVG L +YL R+W L PPAA
Sbjct: 46 RVGDGLRPKYLPRSWIMLEETPPAA 70
>10_08_0482 +
18218163-18218362,18220388-18220446,18223027-18223083,
18223245-18223279,18223617-18223720,18223870-18223945,
18224045-18224103,18224183-18224248,18224338-18224421,
18224503-18224567,18224658-18224740,18224832-18224903,
18225166-18225306,18225395-18225456,18225539-18225605,
18225863-18226075
Length = 480
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -2
Query: 105 SMTTLAIRNCGWAVFLRPNTWDGPGM 28
SMT+ A N WA + P W+ P M
Sbjct: 247 SMTSRADENDQWAAYAGPGGWNDPDM 272
>10_08_0478 +
18192636-18192784,18192991-18193052,18193381-18193437,
18193771-18193805,18193940-18194043,18194238-18194313,
18194469-18194527,18194879-18194962,18195065-18195129,
18195241-18195323,18195670-18195760,18195847-18196157
Length = 391
Score = 27.1 bits (57), Expect = 9.8
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -2
Query: 114 TQHSMTTLAIRNCGWAVFLRPNTWDGPGM 28
T SM + A N WA + RP W+ P M
Sbjct: 206 TWESMVSRADENEVWADYARPGGWNDPDM 234
>07_01_0008 - 56178-57095
Length = 305
Score = 27.1 bits (57), Expect = 9.8
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = -1
Query: 160 TAAVXAQPSPMGARLHAAFHDHACNTQLRVGGFLTSEYLGRAWDXLTVLPPAA 2
TAA PS ARLH+ H +A + L++ TS L LPP+A
Sbjct: 119 TAASHLAPSSAPARLHSWIHYNATSATLQLRLSATSRRPALPLLSLHPLPPSA 171
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,023,579
Number of Sequences: 37544
Number of extensions: 285170
Number of successful extensions: 638
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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