Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30951.Seq
         (547 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47363| Best HMM Match : No HMM Matches (HMM E-Value=.)              75   4e-14

>SB_47363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score = 74.9 bits (176), Expect = 4e-14
 Identities = 35/42 (83%), Positives = 39/42 (92%)
 Frame = +1

Query: 250 STVYAIRQAISKALXAFYQKYVDEASKKEIKDILVQYDRSLL 375
           S +YAIRQAISK+L A+YQKYVDE SKKEI+DILVQYDRSLL
Sbjct: 40  SRIYAIRQAISKSLVAYYQKYVDEVSKKEIRDILVQYDRSLL 81



 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 18/23 (78%), Positives = 19/23 (82%)
 Frame = +3

Query: 384 PRRCEPKKXGGPGARAXYQKSYR 452
           PRR E KK GGPGAR+ YQKSYR
Sbjct: 85  PRRTEAKKFGGPGARSRYQKSYR 107



 Score = 32.3 bits (70), Expect = 0.27
 Identities = 15/25 (60%), Positives = 18/25 (72%)
 Frame = +2

Query: 182 LLLGKEKFSMVXIRVTVXGGGXVAQ 256
           LLLGKE+F  V IRV V GGG  ++
Sbjct: 17  LLLGKERFEGVDIRVRVKGGGHTSR 41


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,450,818
Number of Sequences: 59808
Number of extensions: 307471
Number of successful extensions: 738
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)