Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30951.Seq
(547 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M60854-1|AAA60583.1| 146|Homo sapiens RPS16 protein. 118 2e-26
BC007977-1|AAH07977.1| 146|Homo sapiens ribosomal protein S16 p... 118 2e-26
BC004324-1|AAH04324.1| 146|Homo sapiens ribosomal protein S16 p... 118 2e-26
AB061841-1|BAB79479.1| 146|Homo sapiens ribosomal protein S16 p... 118 2e-26
BC071674-1|AAH71674.1| 152|Homo sapiens RPS16 protein protein. 59 9e-09
AK097937-1|BAC85106.1| 178|Homo sapiens protein ( Homo sapiens ... 55 1e-07
>M60854-1|AAA60583.1| 146|Homo sapiens RPS16 protein.
Length = 146
Score = 118 bits (283), Expect = 2e-26
Identities = 57/100 (57%), Positives = 75/100 (75%)
Frame = +1
Query: 76 AVAYCKRGHGMLRVNGRPLDLVEXRLLQYKLQEPIPFARQGKILYG*XQSDSXXWWSCST 255
AVA+CKRG+G+++VNGRPL+++E R LQYKL EP+ + + + +
Sbjct: 21 AVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQ 80
Query: 256 VYAIRQAISKALXAFYQKYVDEASKKEIKDILVQYDRSLL 375
+YAIRQ+ISKAL A+YQKYVDEASKKEIKDIL+QYDR+LL
Sbjct: 81 IYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLL 120
Score = 48.0 bits (109), Expect = 2e-05
Identities = 20/23 (86%), Positives = 20/23 (86%)
Frame = +3
Query: 384 PRRCEPKKXGGPGARAXYQKSYR 452
PRRCE KK GGPGARA YQKSYR
Sbjct: 124 PRRCESKKFGGPGARARYQKSYR 146
>BC007977-1|AAH07977.1| 146|Homo sapiens ribosomal protein S16
protein.
Length = 146
Score = 118 bits (283), Expect = 2e-26
Identities = 57/100 (57%), Positives = 75/100 (75%)
Frame = +1
Query: 76 AVAYCKRGHGMLRVNGRPLDLVEXRLLQYKLQEPIPFARQGKILYG*XQSDSXXWWSCST 255
AVA+CKRG+G+++VNGRPL+++E R LQYKL EP+ + + + +
Sbjct: 21 AVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQ 80
Query: 256 VYAIRQAISKALXAFYQKYVDEASKKEIKDILVQYDRSLL 375
+YAIRQ+ISKAL A+YQKYVDEASKKEIKDIL+QYDR+LL
Sbjct: 81 IYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLL 120
Score = 48.0 bits (109), Expect = 2e-05
Identities = 20/23 (86%), Positives = 20/23 (86%)
Frame = +3
Query: 384 PRRCEPKKXGGPGARAXYQKSYR 452
PRRCE KK GGPGARA YQKSYR
Sbjct: 124 PRRCESKKFGGPGARARYQKSYR 146
>BC004324-1|AAH04324.1| 146|Homo sapiens ribosomal protein S16
protein.
Length = 146
Score = 118 bits (283), Expect = 2e-26
Identities = 57/100 (57%), Positives = 75/100 (75%)
Frame = +1
Query: 76 AVAYCKRGHGMLRVNGRPLDLVEXRLLQYKLQEPIPFARQGKILYG*XQSDSXXWWSCST 255
AVA+CKRG+G+++VNGRPL+++E R LQYKL EP+ + + + +
Sbjct: 21 AVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQ 80
Query: 256 VYAIRQAISKALXAFYQKYVDEASKKEIKDILVQYDRSLL 375
+YAIRQ+ISKAL A+YQKYVDEASKKEIKDIL+QYDR+LL
Sbjct: 81 IYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLL 120
Score = 48.0 bits (109), Expect = 2e-05
Identities = 20/23 (86%), Positives = 20/23 (86%)
Frame = +3
Query: 384 PRRCEPKKXGGPGARAXYQKSYR 452
PRRCE KK GGPGARA YQKSYR
Sbjct: 124 PRRCESKKFGGPGARARYQKSYR 146
>AB061841-1|BAB79479.1| 146|Homo sapiens ribosomal protein S16
protein.
Length = 146
Score = 118 bits (283), Expect = 2e-26
Identities = 57/100 (57%), Positives = 75/100 (75%)
Frame = +1
Query: 76 AVAYCKRGHGMLRVNGRPLDLVEXRLLQYKLQEPIPFARQGKILYG*XQSDSXXWWSCST 255
AVA+CKRG+G+++VNGRPL+++E R LQYKL EP+ + + + +
Sbjct: 21 AVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQ 80
Query: 256 VYAIRQAISKALXAFYQKYVDEASKKEIKDILVQYDRSLL 375
+YAIRQ+ISKAL A+YQKYVDEASKKEIKDIL+QYDR+LL
Sbjct: 81 IYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLL 120
Score = 48.0 bits (109), Expect = 2e-05
Identities = 20/23 (86%), Positives = 20/23 (86%)
Frame = +3
Query: 384 PRRCEPKKXGGPGARAXYQKSYR 452
PRRCE KK GGPGARA YQKSYR
Sbjct: 124 PRRCESKKFGGPGARARYQKSYR 146
>BC071674-1|AAH71674.1| 152|Homo sapiens RPS16 protein protein.
Length = 152
Score = 59.3 bits (137), Expect = 9e-09
Identities = 23/35 (65%), Positives = 32/35 (91%)
Frame = +1
Query: 76 AVAYCKRGHGMLRVNGRPLDLVEXRLLQYKLQEPI 180
AVA+CKRG+G+++VNGRPL+++E R LQYKL EP+
Sbjct: 21 AVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPV 55
Score = 37.1 bits (82), Expect = 0.040
Identities = 29/71 (40%), Positives = 32/71 (45%)
Frame = +2
Query: 44 QVFGRKKTAHPQLRIASVVMECCV*TGAHWTWLSXDCCSTNFRNLSLLLGKEKFSMVXIR 223
QVFGRKKTA V G + LLLGKE+F+ V IR
Sbjct: 11 QVFGRKKTATAVAHCKRGNGLIKV-NGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIR 69
Query: 224 VTVXGGGXVAQ 256
V V GGG VAQ
Sbjct: 70 VRVKGGGHVAQ 80
>AK097937-1|BAC85106.1| 178|Homo sapiens protein ( Homo sapiens
cDNA FLJ40618 fis, clone THYMU2013089, moderately
similar to 40S RIBOSOMAL PROTEIN S16. ).
Length = 178
Score = 55.2 bits (127), Expect = 1e-07
Identities = 36/94 (38%), Positives = 49/94 (52%)
Frame = +1
Query: 76 AVAYCKRGHGMLRVNGRPLDLVEXRLLQYKLQEPIPFARQGKILYG*XQSDSXXWWSCST 255
AV C+ G G +R+N PL+++ LQYKL E + ++
Sbjct: 32 AVVLCRCGSGFIRMNEGPLEMIRLLTLQYKLLELGLLLDKEQLAGMDIHVRVKGSGHVVQ 91
Query: 256 VYAIRQAISKALXAFYQKYVDEASKKEIKDILVQ 357
+YA+ Q ISKAL Y KYVDEAS +EIKD L +
Sbjct: 92 IYAVLQYISKALVPCYPKYVDEAS-EEIKDTLTR 124
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,935,045
Number of Sequences: 237096
Number of extensions: 1581768
Number of successful extensions: 3006
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2998
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5364536570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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