Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30951.Seq
         (547 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78413-6|CAB01658.1|  144|Caenorhabditis elegans Hypothetical pr...    97   6e-21
Z93372-4|CAB07546.1|  301|Caenorhabditis elegans Hypothetical pr...    28   5.0  
U40060-6|AAA81144.1|  268|Caenorhabditis elegans Hypothetical pr...    27   6.7  

>Z78413-6|CAB01658.1|  144|Caenorhabditis elegans Hypothetical
           protein T01C3.6 protein.
          Length = 144

 Score = 97.5 bits (232), Expect = 6e-21
 Identities = 45/100 (45%), Positives = 69/100 (69%)
 Frame = +1

Query: 76  AVAYCKRGHGMLRVNGRPLDLVEXRLLQYKLQEPIPFARQGKILYG*XQSDSXXWWSCST 255
           AVA+CK+G G+++VNGRPL+ +E ++L+ KLQEP+    + +      +         + 
Sbjct: 19  AVAHCKKGQGLIKVNGRPLEFLEPQILRIKLQEPLLLVGKERFQDVDIRIRVSGGGHVAQ 78

Query: 256 VYAIRQAISKALXAFYQKYVDEASKKEIKDILVQYDRSLL 375
           +YA+RQA++KAL A+Y KYVDE SK+E+K+I   YD+SLL
Sbjct: 79  IYAVRQALAKALVAYYHKYVDEQSKRELKNIFAAYDKSLL 118



 Score = 43.2 bits (97), Expect = 1e-04
 Identities = 19/23 (82%), Positives = 19/23 (82%)
 Frame = +3

Query: 384 PRRCEPKKXGGPGARAXYQKSYR 452
           PRR E KK GGPGARA YQKSYR
Sbjct: 122 PRRRESKKFGGPGARARYQKSYR 144



 Score = 37.9 bits (84), Expect = 0.005
 Identities = 27/71 (38%), Positives = 32/71 (45%)
 Frame = +2

Query: 44  QVFGRKKTAHPQLRIASVVMECCV*TGAHWTWLSXDCCSTNFRNLSLLLGKEKFSMVXIR 223
           Q FGRKKTA              V  G    +L         +   LL+GKE+F  V IR
Sbjct: 9   QTFGRKKTATAVAHCKKGQGLIKV-NGRPLEFLEPQILRIKLQEPLLLVGKERFQDVDIR 67

Query: 224 VTVXGGGXVAQ 256
           + V GGG VAQ
Sbjct: 68  IRVSGGGHVAQ 78


>Z93372-4|CAB07546.1|  301|Caenorhabditis elegans Hypothetical
           protein BE10.4 protein.
          Length = 301

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 310 YVDEASKKEIKDILVQYDRSL 372
           + DE  +KE+ D+  QYDRS+
Sbjct: 151 FCDEVQQKEVGDLFHQYDRSI 171


>U40060-6|AAA81144.1|  268|Caenorhabditis elegans Hypothetical
           protein F38B6.3 protein.
          Length = 268

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 212 VXIRVTVXGGGXVAQFTLSDKLFQRLXSXST 304
           V  RV + GGG V QFT++D +   L    T
Sbjct: 218 VLFRVNMLGGGNVDQFTVADVIRNNLNQLRT 248


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,933,372
Number of Sequences: 27780
Number of extensions: 216678
Number of successful extensions: 487
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)