Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30951.Seq
         (547 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) simi...   105   3e-23
At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same...   100   5e-22
At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C)           100   7e-22
At5g08370.1 68418.m00986 alpha-galactosidase, putative / melibia...    31   0.38 
At3g56310.2 68416.m06260 alpha-galactosidase, putative / melibia...    30   1.2  
At3g56310.1 68416.m06259 alpha-galactosidase, putative / melibia...    30   1.2  
At5g36220.1 68418.m04368 cytochrome P450 81D1 (CYP81D1) (CYP91A1...    27   8.2  
At1g43570.1 68414.m05001 hypothetical protein                          27   8.2  

>At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) similar
           to 40S ribosomal protein S16 GB:AAD22696 [Arabidopsis
           thaliana]
          Length = 146

 Score =  105 bits (251), Expect = 3e-23
 Identities = 50/100 (50%), Positives = 72/100 (72%)
 Frame = +1

Query: 76  AVAYCKRGHGMLRVNGRPLDLVEXRLLQYKLQEPIPFARQGKILYG*XQSDSXXWWSCST 255
           AV YCKRG GM+++NG P++L +  +L++K+ EP+    + +      +  +    + S 
Sbjct: 21  AVTYCKRGSGMIKLNGSPIELYQPEILRFKIFEPVLLLGKHRFAGVDMRIRATGGGNTSR 80

Query: 256 VYAIRQAISKALXAFYQKYVDEASKKEIKDILVQYDRSLL 375
           VYAIRQ+I+KAL A+YQKYVDE SKKEIKDIL++YDR+LL
Sbjct: 81  VYAIRQSIAKALVAYYQKYVDEQSKKEIKDILMRYDRTLL 120



 Score = 46.4 bits (105), Expect = 1e-05
 Identities = 19/23 (82%), Positives = 20/23 (86%)
 Frame = +3

Query: 384 PRRCEPKKXGGPGARAXYQKSYR 452
           PRRCE KK GGPGARA +QKSYR
Sbjct: 124 PRRCESKKFGGPGARARFQKSYR 146


>At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same as
           GB:Q42340
          Length = 146

 Score =  100 bits (240), Expect = 5e-22
 Identities = 50/100 (50%), Positives = 70/100 (70%)
 Frame = +1

Query: 76  AVAYCKRGHGMLRVNGRPLDLVEXRLLQYKLQEPIPFARQGKILYG*XQSDSXXWWSCST 255
           AV +CKRG G++++NG P++L +  +L++K+ EPI    + +      +         S 
Sbjct: 21  AVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPILLLGKHRFAGVNMRIRVNGGGHTSQ 80

Query: 256 VYAIRQAISKALXAFYQKYVDEASKKEIKDILVQYDRSLL 375
           VYAIRQ+I+KAL A+YQKYVDE SKKEIKDILV+YDR+LL
Sbjct: 81  VYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLL 120



 Score = 46.4 bits (105), Expect = 1e-05
 Identities = 19/23 (82%), Positives = 20/23 (86%)
 Frame = +3

Query: 384 PRRCEPKKXGGPGARAXYQKSYR 452
           PRRCEPKK GG GAR+ YQKSYR
Sbjct: 124 PRRCEPKKFGGRGARSRYQKSYR 146


>At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C)
          Length = 146

 Score =  100 bits (239), Expect = 7e-22
 Identities = 49/100 (49%), Positives = 70/100 (70%)
 Frame = +1

Query: 76  AVAYCKRGHGMLRVNGRPLDLVEXRLLQYKLQEPIPFARQGKILYG*XQSDSXXWWSCST 255
           AV +CKRG G++++NG P++L +  +L++K+ EP+    + +      +         S 
Sbjct: 21  AVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKHRFAGVNMRIRVNGGGHTSQ 80

Query: 256 VYAIRQAISKALXAFYQKYVDEASKKEIKDILVQYDRSLL 375
           VYAIRQ+I+KAL A+YQKYVDE SKKEIKDILV+YDR+LL
Sbjct: 81  VYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLL 120



 Score = 46.4 bits (105), Expect = 1e-05
 Identities = 19/23 (82%), Positives = 20/23 (86%)
 Frame = +3

Query: 384 PRRCEPKKXGGPGARAXYQKSYR 452
           PRRCEPKK GG GAR+ YQKSYR
Sbjct: 124 PRRCEPKKFGGRGARSRYQKSYR 146


>At5g08370.1 68418.m00986 alpha-galactosidase, putative / melibiase,
           putative / alpha-D-galactoside galactohydrolase,
           putative similar to alpha-galactosidase SP:Q42656 from
           [Coffea arabica]
          Length = 396

 Score = 31.5 bits (68), Expect = 0.38
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 105 SMTTLAIRNCGWAVFLRPNTWDGPGM 28
           SMT +A +N  WA + RP +W+ P M
Sbjct: 223 SMTLIADQNDRWASYARPGSWNDPDM 248


>At3g56310.2 68416.m06260 alpha-galactosidase, putative / melibiase,
           putative / alpha-D-galactoside galactohydrolase,
           putative similar to alpha-galactosidase SP:Q42656 from
           [Coffea arabica]
          Length = 413

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -2

Query: 114 TQHSMTTLAIRNCGWAVFLRPNTWDGPGM 28
           T  SMTT+A  N  WA +  P  W+ P M
Sbjct: 228 TWASMTTIADLNNKWAAYAGPGGWNDPDM 256


>At3g56310.1 68416.m06259 alpha-galactosidase, putative / melibiase,
           putative / alpha-D-galactoside galactohydrolase,
           putative similar to alpha-galactosidase SP:Q42656 from
           [Coffea arabica]
          Length = 437

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -2

Query: 114 TQHSMTTLAIRNCGWAVFLRPNTWDGPGM 28
           T  SMTT+A  N  WA +  P  W+ P M
Sbjct: 252 TWASMTTIADLNNKWAAYAGPGGWNDPDM 280


>At5g36220.1 68418.m04368 cytochrome P450 81D1 (CYP81D1) (CYP91A1)
           Identical to Cytochrome P450 (SP:Q9FG65) [Arabidopsis
           thaliana];
          Length = 502

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 99  TTLAIRNCGWAVFLRPNTWDGP 34
           TTL +    WA+   PNTWD P
Sbjct: 394 TTLLVN--AWAIHRDPNTWDDP 413


>At1g43570.1 68414.m05001 hypothetical protein
          Length = 348

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -3

Query: 371 KLLSYCTRMSLISFFEASSTYFW*XAXR 288
           + LSYC R+ LI     S T FW  A R
Sbjct: 27  RFLSYCGRLQLIKSVLMSITNFWSSAFR 54


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,306,558
Number of Sequences: 28952
Number of extensions: 207350
Number of successful extensions: 501
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1023490624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)