Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30947.Seq
(598 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5808| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.076
SB_52294| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.71
SB_49207| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.93
SB_3663| Best HMM Match : MBT (HMM E-Value=0) 30 1.6
SB_18984| Best HMM Match : DNA_topoisoIV (HMM E-Value=0) 29 2.9
SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35) 29 3.8
SB_54200| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_20579| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.39) 28 6.6
SB_18710| Best HMM Match : Glycophorin_A (HMM E-Value=0.42) 28 6.6
SB_19759| Best HMM Match : HATPase_c (HMM E-Value=1.1e-13) 27 8.7
SB_59693| Best HMM Match : Phage_integr_N (HMM E-Value=2.3) 27 8.7
SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
>SB_5808| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 473
Score = 34.3 bits (75), Expect = 0.076
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = +3
Query: 216 AGEGAQKEDQRSRKENKGKPEPKPAKGVTVPTRKGIKETQNVKSQ 350
A +KE ++ RK+++GKP+P+ K PTRK +K + + +
Sbjct: 293 ATSNEKKEQEKERKKSEGKPKPRSEK-EKQPTRKRVKRPEKLNKR 336
>SB_52294| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 394
Score = 31.1 bits (67), Expect = 0.71
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 136 YGVGVVNRYALFLDDETDPLDALKAREQ 219
Y +GV NR+ L L DE DP K E+
Sbjct: 6 YSIGVNNRFGLLLSDEEDPETTFKESEK 33
>SB_49207| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 248
Score = 30.7 bits (66), Expect = 0.93
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +3
Query: 219 GEGAQKEDQRSRKENKGKPEPKPAKGVTVPTRKG 320
G+ +QK+++ RK N+GKP P +K + + G
Sbjct: 46 GKTSQKDEKPERKSNRGKPGPNDSKYIRLAKAGG 79
>SB_3663| Best HMM Match : MBT (HMM E-Value=0)
Length = 327
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +3
Query: 207 SARAGEGAQKEDQRSRKENKGKPEPKPAKGVTVPT 311
SA + + ++E++ KE + KP+P+P +PT
Sbjct: 158 SAASSDDEEEEEEEEEKEKEEKPKPEPELAPPLPT 192
>SB_18984| Best HMM Match : DNA_topoisoIV (HMM E-Value=0)
Length = 1182
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +3
Query: 240 DQRSRKENKGKPEPKPAKGVTVPTRKGIKETQNVKSQXLQKWRTTE 377
D+ + K P +PAKGVT +R G ++ + + + K +TT+
Sbjct: 1134 DEAQPGKKKAAPRKRPAKGVTAASRDGDSDS-DASVEVVSKKKTTK 1178
>SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)
Length = 2049
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +3
Query: 204 KSARAGEGAQKEDQRSRKENKGKPEPKPAKGVTVPTR-KGIKETQNVKSQXLQK 362
KSA GEG + ++ +K N G K K +T + K +E + K Q +Q+
Sbjct: 492 KSATGGEGKEAPAKKKQKHNDGDAPKKSKKKLTHEEKLKLAEEEKEKKKQQIQE 545
>SB_54200| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 996
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +3
Query: 222 EGAQKEDQRSRKENKGKPEPKPAKG 296
EG KED KE KGK E +G
Sbjct: 875 EGKNKEDNEKEKEKKGKDEKDEKEG 899
>SB_20579| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.39)
Length = 721
Score = 27.9 bits (59), Expect = 6.6
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +3
Query: 201 VKSARAGEGAQKEDQRSRKENKGKPEPKP 287
+ SA + A++E+ +R+EN P+P+P
Sbjct: 672 LSSAEPSKAAEQEETSTREENSVDPQPEP 700
>SB_18710| Best HMM Match : Glycophorin_A (HMM E-Value=0.42)
Length = 1451
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Frame = +3
Query: 231 QKEDQRSRKENKGKPEPKPAKGVTVPTRKGIKETQ----NVKSQXLQKWRTTE 377
+K+ Q S N GKP + A G ++ + + + Q + K++ LQ+ +TTE
Sbjct: 931 KKQIQHSESANNGKPNREQASGASLNSVQSEDQHQYSSLSTKNRDLQRAQTTE 983
>SB_19759| Best HMM Match : HATPase_c (HMM E-Value=1.1e-13)
Length = 295
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = -1
Query: 319 PFRVGTVTPLAGLGSGLP 266
P GTV PLAG G GLP
Sbjct: 180 PSTSGTVAPLAGYGYGLP 197
>SB_59693| Best HMM Match : Phage_integr_N (HMM E-Value=2.3)
Length = 319
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +3
Query: 225 GAQKEDQRSRKENKGKPEPKPAKGVTVPTRKG 320
G Q++ S + +G+ EP+PA+ VT T +G
Sbjct: 258 GNQQQIVDSSRATRGETEPRPAQTVTENTTRG 289
>SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1913
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +3
Query: 201 VKSARAGEGAQKEDQRSRKENKGKPE-PKPAKGVTVPTRKG 320
+K+ AGEG Q++D RS E P P+P G T G
Sbjct: 1041 IKACDAGEG-QRKDSRSGAEGAAPPPLPRPYTGAGPKTPNG 1080
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,960,615
Number of Sequences: 59808
Number of extensions: 256230
Number of successful extensions: 643
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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