Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30947.Seq
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g54020.1 68418.m06719 expressed protein                             27   7.2  
At4g02400.1 68417.m00324 U3 ribonucleoprotein (Utp) family prote...    27   7.2  
At3g10680.1 68416.m01284 heat shock protein-related contains wea...    27   9.5  
At2g26670.1 68415.m03199 heme oxygenase 1 (HO1) (HY1) identical ...    27   9.5  

>At5g54020.1 68418.m06719 expressed protein 
          Length = 556

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 41  DKMSPY*CAESNPITSKYCVIKSSR 115
           D  +PY C E N +  KYC+ K  R
Sbjct: 154 DDRNPYVCLECNLMVHKYCIEKLPR 178


>At4g02400.1 68417.m00324 U3 ribonucleoprotein (Utp) family protein
           contains Pfam profile: PF04615 Utp14 protein
          Length = 858

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +3

Query: 201 VKSARAGEGAQKEDQRSRKENKGKPEPKPAKGVTVPTRKGIKETQNV-KSQXLQKWRTTE 377
           ++ A AG+   +E ++ ++E   +  P+P K V VP   G  +  NV K + L  W   E
Sbjct: 669 IQRAFAGDDVVEEFEKDKQEVLNQEVPEPEKPVLVP---GWGQWTNVQKKRGLPSWMVRE 725


>At3g10680.1 68416.m01284 heat shock protein-related contains weak
           similarity to Pfam profile PF00011: Hsp20/alpha
           crystallin family
          Length = 490

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +3

Query: 204 KSARAGEGAQKEDQRSRKENKGKPEPKPAKGVTVPTRKGIKETQNV 341
           K  +A +  +K  QRS +E  G P P    G T+  +K ++E + V
Sbjct: 116 KQEKAVQDQEKIGQRSNQEKSGGPGP---NGSTLGRKKALEEEKQV 158


>At2g26670.1 68415.m03199 heme oxygenase 1 (HO1) (HY1) identical to
           plastid heme oxygenase (HY1) [Arabidopsis thaliana]
           GI:4877362, heme oxygenase 1 [Arabidopsis thaliana]
           GI:4530591 GB:AF132475; annotation updated per Seth J.
           Davis at University of Wisconsin-Madison
          Length = 282

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
 Frame = +3

Query: 216 AGEGAQKEDQRSRKENKGKPEPKPAKGVTVPTR----KGIKETQNVKSQXLQKWR-TTEG 380
           A   A+K+ +R   E+KG  E      + + T+    +G KET++++ + + KW  T EG
Sbjct: 56  ATTAAEKQKKRYPGESKGFVEEMRFVAMRLHTKDQAKEGEKETKSIEERPVAKWEPTVEG 115


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,428,349
Number of Sequences: 28952
Number of extensions: 180367
Number of successful extensions: 440
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)