Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30946.Seq
         (558 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       24   1.0  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    24   1.0  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   5.4  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   5.4  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    21   7.2  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    21   7.2  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    21   7.2  
DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      21   9.5  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   9.5  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 10/39 (25%), Positives = 15/39 (38%)
 Frame = +3

Query: 45  RIRTSKCRFSQSYRHLIGHERQRSGGSNQLLLRATQRTC 161
           R+   KC F   Y+H + +  +   GS          TC
Sbjct: 230 RLTCPKCPFITEYKHHLEYHLRNHAGSKPFQCNKCDYTC 268


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +2

Query: 347 AGWRSNGFTCICXCTIGSAKWKARLHVHSC 436
           AG  SNG  C C  T  SAK + +    SC
Sbjct: 181 AGKASNGNKCCCLRTCSSAK-RPKFENSSC 209


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 15/47 (31%), Positives = 17/47 (36%)
 Frame = +2

Query: 74   TELSAPYWARATKEWWK*PTASACHTKNMPIKSKRNLITRWMFTS*T 214
            TE   P W      WW   T S   T      ++R   TR   TS T
Sbjct: 1028 TEHMHPDWTTKPSTWWSSTTTSPWWTTT---TTRRTTTTRPTTTSTT 1071


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +2

Query: 368 FTCICXCTIGSAKWKARLHVH 430
           + C+    +GSA   AR++V+
Sbjct: 489 YRCVASSKVGSADHSARINVY 509


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -1

Query: 324 QAHGIHGNNTRV*QRSGWLLHCQCPPTNN 238
           Q H +H N  ++   SG+ L     PTN+
Sbjct: 127 QHHFLHENKYQLEVDSGYHLGASSTPTNS 155


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -1

Query: 324 QAHGIHGNNTRV*QRSGWLLHCQCPPTNN 238
           Q H +H N  ++   SG+ L     PTN+
Sbjct: 127 QHHFLHENKYQLEVDSGYHLGASSTPTNS 155


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -1

Query: 324 QAHGIHGNNTRV*QRSGWLLHCQCPPTNN 238
           Q H +H N  ++   SG+ L     PTN+
Sbjct: 127 QHHFLHENKYQLEVDSGYHLGASSTPTNS 155


>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -2

Query: 446 SDIYRSXHATLLSIWHSQW 390
           +D+  S +AT+ S W + W
Sbjct: 242 NDVVASCYATIDSQWLAHW 260


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 11/30 (36%), Positives = 12/30 (40%)
 Frame = +3

Query: 33  SNCGRIRTSKCRFSQSYRHLIGHERQRSGG 122
           S  GRI   KC         + H RQ  GG
Sbjct: 630 SGAGRITCEKCGNKIDTSLFVDHIRQCVGG 659


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,310
Number of Sequences: 336
Number of extensions: 3260
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13681771
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)