Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30946.Seq
(558 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0034 - 228939-229028,229117-229230,229309-229430,229827-23... 77 1e-14
04_04_1468 + 33811471-33811657,33811888-33811980,33812899-338130... 59 3e-09
04_03_0650 - 18411588-18411645,18412020-18412172,18412340-184124... 48 5e-06
11_01_0433 - 3323372-3324616,3324708-3324905 28 4.4
07_03_1709 - 28873172-28873327,28873519-28873584,28874067-288741... 28 4.4
09_02_0317 + 7186148-7186243,7186406-7186572,7186766-7186878,718... 28 5.8
05_05_0039 - 21782093-21782320,21782383-21782754,21783031-217834... 28 5.8
01_05_0320 - 20874691-20875230,20879337-20879590,20880014-208810... 28 5.8
>05_01_0034 -
228939-229028,229117-229230,229309-229430,229827-230056,
230458-230537,230641-230859
Length = 284
Score = 76.6 bits (180), Expect = 1e-14
Identities = 38/85 (44%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Frame = +1
Query: 4 SVKVHPVVLFQIVDAYERRNADSHRVIGTLLGTS-DKGVVEVTNCFCVPHKEHADQVEAE 180
S +V VV+F I D+Y RR + RVIGTLLG+ G V V N + VPH E DQV +
Sbjct: 18 SARVEAVVVFNICDSYVRRPDQAERVIGTLLGSVLPDGTVHVRNSYVVPHNESPDQVALD 77
Query: 181 LNYAMDVYELNRRVNSSESIVGWWA 255
+ Y ++Y + +VN E IVGW++
Sbjct: 78 IEYHHNMYASHHKVNPKEVIVGWFS 102
Score = 52.4 bits (120), Expect = 2e-07
Identities = 24/82 (29%), Positives = 42/82 (51%)
Frame = +3
Query: 255 TGNEVTNHSSVIHEYYSRECREPVHXTLDTSLAGGRMGLRAYVXVPLGVPNGKQGCMXTP 434
TG V+ S++IH++YSRE + P+H T+DT G ++AY+ L + +
Sbjct: 103 TGFGVSGGSTLIHDFYSREVQSPIHLTVDTGFTRGDASIKAYISSNLSLGDRHLAAQFQE 162
Query: 435 VDVTLTCYEPEIVGLQVCQKTV 500
+ + L E VG + + T+
Sbjct: 163 IPLDLRMLEAGKVGFDILKSTI 184
>04_04_1468 +
33811471-33811657,33811888-33811980,33812899-33813027,
33813089-33813166,33813377-33813435,33813522-33813644,
33814225-33814282,33814383-33814468,33814564-33814635
Length = 294
Score = 58.8 bits (136), Expect = 3e-09
Identities = 32/78 (41%), Positives = 46/78 (58%), Gaps = 4/78 (5%)
Frame = +1
Query: 7 VKVHPVVLFQIVDAYERRNADSH-RVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVE--- 174
V VHP+VL IVD Y R D+ RV+G LLGTS +G V+VTN + VP +E
Sbjct: 17 VVVHPLVLLSIVDHYNRVARDTRKRVVGVLLGTSSRGSVDVTNSYAVPFEEDDKDPRIWF 76
Query: 175 AELNYAMDVYELNRRVNS 228
+ NY ++ + +R+N+
Sbjct: 77 LDHNYHESMFSMFKRINA 94
>04_03_0650 -
18411588-18411645,18412020-18412172,18412340-18412407,
18412499-18412600,18412695-18412766,18412843-18412891,
18412971-18413104,18413488-18413554,18414471-18414574,
18414677-18414793,18415538-18415647,18415763-18415772
Length = 347
Score = 48.0 bits (109), Expect = 5e-06
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Frame = +1
Query: 79 VIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEAE-LNYAMDVYELNRRVNSSESIVGWW 252
V G LLG V+EVTNCF P +E ++ +A+ NY +++ R VN + VGW+
Sbjct: 57 VTGQLLGLDVGSVLEVTNCFPFPMREDDEEADADGANYQLEMMRCLREVNVDNNTVGWY 115
>11_01_0433 - 3323372-3324616,3324708-3324905
Length = 480
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -1
Query: 222 DSSVQLVNIHRVIKFRFDLIGMFFVWHAEAVG 127
D++V L+ IH+ I F F ++FVW +A+G
Sbjct: 321 DAAVVLMLIHQFITFGFACTPLYFVWE-KAIG 351
>07_03_1709 -
28873172-28873327,28873519-28873584,28874067-28874127,
28875406-28875462,28876301-28876531,28876685-28876799,
28876897-28877136,28877222-28877316,28877406-28877585,
28877663-28877839,28877920-28878890
Length = 782
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 418 PCFPFGTPNGTXTYARKPIRPPASEVSRVXWTG 320
P PF +P + +AR P P +E+S TG
Sbjct: 599 PDSPFASPTKSAGFARDPFAPTEAEISATASTG 631
>09_02_0317 +
7186148-7186243,7186406-7186572,7186766-7186878,
7187059-7187133,7187215-7187328,7187545-7187612,
7187690-7187773,7187966-7188019,7188104-7188184,
7188279-7188372,7188501-7188574,7188656-7188766,
7188976-7189032,7189119-7189223,7189584-7189687,
7190021-7190186,7190279-7190416
Length = 566
Score = 27.9 bits (59), Expect = 5.8
Identities = 17/60 (28%), Positives = 26/60 (43%)
Frame = +3
Query: 279 SSVIHEYYSRECREPVHXTLDTSLAGGRMGLRAYVXVPLGVPNGKQGCMXTPVDVTLTCY 458
SSV H ++ + R + D A M ++ + P VP GK +PVD+ Y
Sbjct: 407 SSVCH-FFGYQARGSLPSNFDCDYAYAMMSVKRHSRSPGAVPTGKPVIHPSPVDLQGKAY 465
>05_05_0039 -
21782093-21782320,21782383-21782754,21783031-21783496,
21784896-21784993,21785179-21785362,21785462-21785574,
21785942-21786127,21786191-21786364
Length = 606
Score = 27.9 bits (59), Expect = 5.8
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -1
Query: 222 DSSVQLVNIHRVIKFRFDLIGMFFVWHAEAVG 127
D++V L+ IH+ I F F ++FVW +A+G
Sbjct: 311 DAAVILMLIHQFITFGFACTPLYFVWE-KAIG 341
>01_05_0320 -
20874691-20875230,20879337-20879590,20880014-20881087,
20881259-20881511,20881548-20882369
Length = 980
Score = 27.9 bits (59), Expect = 5.8
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +2
Query: 98 ARATKEWWK*PTASACHTKN-MPIKSK 175
A +KEWW +ACH N +P+K K
Sbjct: 508 AGLSKEWWGEAVLTACHVLNKIPMKHK 534
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,930,154
Number of Sequences: 37544
Number of extensions: 377897
Number of successful extensions: 923
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 920
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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