Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30946.Seq
(558 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g39990.1 68415.m04914 eukaryotic translation initiation facto... 81 5e-16
At5g05780.1 68418.m00636 26S proteasome non-ATPase regulatory su... 74 7e-14
At3g11270.1 68416.m01370 26S proteasome non-ATPase regulatory su... 73 1e-13
At1g10840.1 68414.m01246 eukaryotic translation initiation facto... 49 2e-06
At5g01240.2 68418.m00032 amino acid permease, putative strong si... 30 0.91
At5g01240.1 68418.m00031 amino acid permease, putative strong si... 30 0.91
>At2g39990.1 68415.m04914 eukaryotic translation initiation factor 3
subunit 5 / eIF-3 epsilon / eIF3f (TIF3F1) identical to
SP|O04202 Eukaryotic translation initiation factor 3
subunit 5 (eIF-3 epsilon) (eIF3 p32 subunit) (eIF3f)
{Arabidopsis thaliana}; contains Pfam profile PF01398:
Mov34/MPN/PAD-1 family
Length = 293
Score = 81.0 bits (191), Expect = 5e-16
Identities = 34/86 (39%), Positives = 58/86 (67%), Gaps = 1/86 (1%)
Frame = +1
Query: 1 ISVKVHPVVLFQIVDAYERRNADSHRVIGTLLGTS-DKGVVEVTNCFCVPHKEHADQVEA 177
++ ++HP+V+F + D + RR + RVIGTLLG+ G V++ N + VPH E +DQV
Sbjct: 26 LTARIHPLVIFNVCDCFVRRPDSAERVIGTLLGSILPDGTVDIRNSYAVPHNESSDQVAV 85
Query: 178 ELNYAMDVYELNRRVNSSESIVGWWA 255
+++Y ++ + +VNS E+IVGW++
Sbjct: 86 DIDYHHNMLASHLKVNSKETIVGWYS 111
Score = 50.4 bits (115), Expect = 8e-07
Identities = 26/81 (32%), Positives = 41/81 (50%)
Frame = +3
Query: 255 TGNEVTNHSSVIHEYYSRECREPVHXTLDTSLAGGRMGLRAYVXVPLGVPNGKQGCMXTP 434
TG V SS+IH++Y+RE P+H T+DT G ++A+V L + + +
Sbjct: 112 TGAGVNGGSSLIHDFYAREVPNPIHLTVDTGFTNGEGTIKAFVSSNLSLGDRQLVAHFQE 171
Query: 435 VDVTLTCYEPEIVGLQVCQKT 497
+ V L + E VG V + T
Sbjct: 172 IPVDLRMVDAERVGFDVLKAT 192
>At5g05780.1 68418.m00636 26S proteasome non-ATPase regulatory
subunit 7, putative / 26S proteasome regulatory subunit
S12, putative / MOV34 protein, putative contains
similarity to 26s proteasome regulatory subunit s12
(proteasome subunit p40) (mov34 protein) SP:P26516 from
[Mus musculus]; contains Pfam profile PF01398:
Mov34/MPN/PAD-1 family
Length = 308
Score = 73.7 bits (173), Expect = 7e-14
Identities = 38/91 (41%), Positives = 55/91 (60%), Gaps = 4/91 (4%)
Frame = +1
Query: 7 VKVHPVVLFQIVDAYERRNADSH-RVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVE--- 174
V VHP+VL IVD Y R DS RV+G LLG+S +GVV+VTN + VP +E
Sbjct: 17 VVVHPLVLLSIVDHYNRVAKDSSKRVVGVLLGSSSRGVVDVTNSYAVPFEEDDKDPSIWF 76
Query: 175 AELNYAMDVYELNRRVNSSESIVGWWALAMK 267
+ NY ++ + +R+N+ E +VGW++ K
Sbjct: 77 LDHNYHESMFHMFKRINAKEHVVGWYSTGPK 107
>At3g11270.1 68416.m01370 26S proteasome non-ATPase regulatory
subunit 7, putative / 26S proteasome regulatory subunit
S12, putative / MOV34 protein, putative contains
similarity to 26S proteasome regulatory subunit S12
(MOV34) SP:P26516 from [Mus musculus]
Length = 310
Score = 72.9 bits (171), Expect = 1e-13
Identities = 38/91 (41%), Positives = 54/91 (59%), Gaps = 4/91 (4%)
Frame = +1
Query: 7 VKVHPVVLFQIVDAYERRNAD-SHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVE--- 174
V VHP+VL IVD Y R D S RV+G LLG+S +G V+VTN + VP +E
Sbjct: 17 VIVHPLVLLSIVDHYNRVAKDTSKRVVGVLLGSSSRGTVDVTNSYAVPFEEDDKDTSIWF 76
Query: 175 AELNYAMDVYELNRRVNSSESIVGWWALAMK 267
+ NY ++ + +R+N+ E IVGW++ K
Sbjct: 77 LDHNYHESMFHMFKRINAKEHIVGWYSTGPK 107
>At1g10840.1 68414.m01246 eukaryotic translation initiation factor 3
subunit 3 / eIF-3 gamma / eIF3h (TIF3H1) identical to
SP|Q9C5Z2 Eukaryotic translation initiation factor 3
subunit 3 (eIF-3 gamma) (eIF3 p38 subunit) (eIF3h)
{Arabidopsis thaliana}; contains Pfam profile PF01398:
Mov34/MPN/PAD-1 family
Length = 337
Score = 48.8 bits (111), Expect = 2e-06
Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Frame = +1
Query: 79 VIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEAE-LNYAMDVYELNRRVNSSESIVGWW 252
V G LLG V+EVTNCF P ++ +++EA+ NY +++ R VN + VGW+
Sbjct: 47 VTGQLLGLDVGSVLEVTNCFPFPVRDDDEEIEADGANYQLEMMRCLREVNVDNNTVGWY 105
>At5g01240.2 68418.m00032 amino acid permease, putative strong
similarity to AUX1 GI:1531758 from [Arabidopsis
thaliana]; contains Pfam profile PF01490: Transmembrane
amino acid transporter protein
Length = 408
Score = 30.3 bits (65), Expect = 0.91
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = -1
Query: 222 DSSVQLVNIHRVIKFRFDLIGMFFVWHAEAVGYFH 118
D++V L+ IH+ I F F ++FVW +A+G H
Sbjct: 238 DTAVILMLIHQFITFGFACTPLYFVWE-KAIGMHH 271
>At5g01240.1 68418.m00031 amino acid permease, putative strong
similarity to AUX1 GI:1531758 from [Arabidopsis
thaliana]; contains Pfam profile PF01490: Transmembrane
amino acid transporter protein
Length = 488
Score = 30.3 bits (65), Expect = 0.91
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = -1
Query: 222 DSSVQLVNIHRVIKFRFDLIGMFFVWHAEAVGYFH 118
D++V L+ IH+ I F F ++FVW +A+G H
Sbjct: 318 DTAVILMLIHQFITFGFACTPLYFVWE-KAIGMHH 351
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,926,371
Number of Sequences: 28952
Number of extensions: 277797
Number of successful extensions: 641
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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