Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30945.Seq
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c...    27   3.4  
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos...    27   3.4  
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb...    26   4.5  
SPBC2A9.10 |||Bin3 family|Schizosaccharomyces pombe|chr 2|||Manual     26   4.5  

>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 625

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 546 LDAKGRGSFIVADMGEVYXQQWRDTG 469
           LD++G     V D+G +Y  QWR  G
Sbjct: 420 LDSRGLTDRKVGDLGPIYGFQWRHFG 445


>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = -3

Query: 264 DYSAKLMSRYNQCNQVQQCRNPTILCIQGISFFHFNDE 151
           D  +   SRYN C   +   +P     +G  F  F DE
Sbjct: 201 DVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDE 238


>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +3

Query: 57  DVDGRLLLYSSCRSAGGSTI**EKXASFYRRLRH*SGKR 173
           D+D R  LYS+   +GGST+       F   LR  SGK+
Sbjct: 291 DIDLRSTLYSNIVLSGGSTLLRGFGERFISELRAISGKK 329


>SPBC2A9.10 |||Bin3 family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 268

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -2

Query: 286 YYILTEERLFSKIDVQIQPV*SSTTMPQSNNFVHSGYI 173
           YY ++  + FS+I VQ+QP  +    P +  F  + ++
Sbjct: 102 YYPISSIKKFSRIPVQLQPPLNKQNFPHNIEFETADFL 139


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,857,161
Number of Sequences: 5004
Number of extensions: 58004
Number of successful extensions: 133
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)