Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30945.Seq
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53416| Best HMM Match : Acetyltransf_1 (HMM E-Value=2.7e-21)        29   4.8  
SB_51927| Best HMM Match : Acetyltransf_1 (HMM E-Value=2.7e-21)        29   4.8  
SB_15447| Best HMM Match : C1_1 (HMM E-Value=0.11)                     28   8.4  

>SB_53416| Best HMM Match : Acetyltransf_1 (HMM E-Value=2.7e-21)
          Length = 209

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 18/67 (26%), Positives = 35/67 (52%)
 Frame = +1

Query: 4   PKLSLCGLVLSVWGIIQLTLMGVFYYIRAVALLEDLPFDEKNXPHSIEDFVIEVEKGYTL 183
           P L L  LV +V  +  L L+G+   + AV +   L F + +  H++E  + ++ K Y++
Sbjct: 43  PALFLTRLVAAVTSV-WLALIGLGLIVSAVYISYYLKFMQ-HINHALETDLADISKSYSV 100

Query: 184 NAQNCWI 204
              + W+
Sbjct: 101 EKSSFWV 107


>SB_51927| Best HMM Match : Acetyltransf_1 (HMM E-Value=2.7e-21)
          Length = 238

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 18/67 (26%), Positives = 35/67 (52%)
 Frame = +1

Query: 4   PKLSLCGLVLSVWGIIQLTLMGVFYYIRAVALLEDLPFDEKNXPHSIEDFVIEVEKGYTL 183
           P L L  LV +V  +  L L+G+   + AV +   L F + +  H++E  + ++ K Y++
Sbjct: 72  PALFLTRLVAAVTSV-WLALIGLGLIVSAVYISYYLKFMQ-HINHALETDLADISKSYSV 129

Query: 184 NAQNCWI 204
              + W+
Sbjct: 130 EKSSFWV 136


>SB_15447| Best HMM Match : C1_1 (HMM E-Value=0.11)
          Length = 316

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 65  WASFIIFELSLCWRIYHLMRKXRLILSKTSSLKWKKDI 178
           W S  I+  + C+ ++HL    +   S TS +K + DI
Sbjct: 214 WCSSAIWSCTNCFHVFHLKCARKWATSATSEVKGEYDI 251


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,364,731
Number of Sequences: 59808
Number of extensions: 385962
Number of successful extensions: 891
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)