Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30945.Seq
         (698 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g27520.1 68415.m03329 F-box family protein contains Pfam prof...    29   3.0  
At2g46020.2 68415.m05725 transcription regulatory protein SNF2, ...    28   5.2  
At2g46020.1 68415.m05724 transcription regulatory protein SNF2, ...    28   5.2  
At4g10120.1 68417.m01655 sucrose-phosphate synthase, putative si...    28   6.8  

>At2g27520.1 68415.m03329 F-box family protein contains Pfam
           profile: PF00646 F-box domain
          Length = 347

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/43 (34%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
 Frame = -1

Query: 623 QKDFKII*KFCLNKWADDLWQYAGKNWMRKV---EDRS-LWRI 507
           ++D K+I   C ++W +++    GKN  +K+   +DRS LWR+
Sbjct: 288 EEDKKVIVVDCDDRWKENMIYIVGKNGFKKLSYEKDRSNLWRL 330


>At2g46020.2 68415.m05725 transcription regulatory protein SNF2,
            putative similar to SP|P22082 Transcription regulatory
            protein SNF2 (SWI/SNF complex component SNF2)
            {Saccharomyces cerevisiae}; contains Pfam profiles
            PF00271: Helicase conserved C-terminal domain, PF00176:
            SNF2 family N-terminal domain
          Length = 2193

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +1

Query: 37   VWGIIQLTLMGVFYYIRAVALLEDLPFDEKNXPHSIEDFVIEVEK 171
            +W ++ L L  VF   +A       PF ++   H+IED  +E EK
Sbjct: 1148 LWSLLNLLLPDVFDNRKAFHDWFAQPFQKEGPAHNIEDDWLETEK 1192


>At2g46020.1 68415.m05724 transcription regulatory protein SNF2,
            putative similar to SP|P22082 Transcription regulatory
            protein SNF2 (SWI/SNF complex component SNF2)
            {Saccharomyces cerevisiae}; contains Pfam profiles
            PF00271: Helicase conserved C-terminal domain, PF00176:
            SNF2 family N-terminal domain
          Length = 2192

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +1

Query: 37   VWGIIQLTLMGVFYYIRAVALLEDLPFDEKNXPHSIEDFVIEVEK 171
            +W ++ L L  VF   +A       PF ++   H+IED  +E EK
Sbjct: 1147 LWSLLNLLLPDVFDNRKAFHDWFAQPFQKEGPAHNIEDDWLETEK 1191


>At4g10120.1 68417.m01655 sucrose-phosphate synthase, putative
           similar to sucrose-phosphate synthase, Zea mays,
           PIR2:JQ1329; contains non-consensus (GC) donor splice
           site at intron 4
          Length = 1050

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +2

Query: 92  SLCWRIYHLMRKXRLIL 142
           ++CWRI+HL RK + I+
Sbjct: 102 NICWRIWHLARKKKQIV 118


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,464,351
Number of Sequences: 28952
Number of extensions: 280619
Number of successful extensions: 626
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)