Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30944.Seq
         (698 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    22   5.5  
AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory recept...    22   5.5  
AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory recept...    22   5.5  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    21   9.7  

>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -1

Query: 122 WVCPCDGGSRSINHQGFYYLPFYS 51
           W+C     + S   + FYYLP  S
Sbjct: 49  WICALVNYNVSEISENFYYLPAMS 72


>AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory receptor
           candidate 18 protein.
          Length = 387

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +1

Query: 505 FRSAGACAPSSSKWSKQIHHHFASWAPDTVI 597
           F + G    + SK SKQ+ +    W P  +I
Sbjct: 143 FDTLGGLYSTWSKKSKQVEYFLIHWYPRMLI 173


>AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory receptor
           candidate 17 protein.
          Length = 372

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +1

Query: 505 FRSAGACAPSSSKWSKQIHHHFASWAPDTVI 597
           F + G    + SK SKQ+ +    W P  +I
Sbjct: 143 FDTLGGLYSTWSKKSKQVEYFLIHWYPRMLI 173


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 568 NGDGSVSTTLNSTARMPPRT*RCRHD 491
           NG+G  S+++  T    P + R RH+
Sbjct: 65  NGNGMTSSSMGYTTIGSPISNRIRHE 90


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,298
Number of Sequences: 336
Number of extensions: 3562
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)