Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30944.Seq
         (698 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49886-1|CAA90050.1|  809|Caenorhabditis elegans Hypothetical pr...   131   4e-31
Z48334-9|CAA88314.1|  810|Caenorhabditis elegans Hypothetical pr...   121   4e-28
Z48045-12|CAA88105.1|  810|Caenorhabditis elegans Hypothetical p...   121   4e-28
AF125450-3|AAD12817.1|  309|Caenorhabditis elegans Hypothetical ...    29   4.2  
Z66562-5|CAA91466.1|  250|Caenorhabditis elegans Hypothetical pr...    28   7.4  
AB107358-1|BAD89379.1|  250|Caenorhabditis elegans troponin I 1 ...    28   7.4  
Z12017-1|CAA78047.1|  458|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>Z49886-1|CAA90050.1|  809|Caenorhabditis elegans Hypothetical
           protein C06A1.1 protein.
          Length = 809

 Score =  131 bits (317), Expect = 4e-31
 Identities = 59/133 (44%), Positives = 86/133 (64%)
 Frame = +1

Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402
           + +G+  + +  I++SD++CP+EK+RM             DVVSI P P++ YG R+H+L
Sbjct: 64  ILKGKKRKESVAIIVSDESCPNEKVRMNRVVRNNLRIRLGDVVSITPAPNLSYGTRIHVL 123

Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFRSAGACAPSSSKWSKQIHHHFASWA 582
           PIDD++EGLTGNLF+V+LKPYF+EAYRP+H+ D F    A      K  +         +
Sbjct: 124 PIDDTIEGLTGNLFDVFLKPYFLEAYRPLHKGDIFTVQAAMRTVEFKVVETEPAPACIVS 183

Query: 583 PDTVIHCDGEPIK 621
           PDT+IH +G+PIK
Sbjct: 184 PDTMIHYEGDPIK 196



 Score = 90.6 bits (215), Expect = 9e-19
 Identities = 42/63 (66%), Positives = 55/63 (87%)
 Frame = +2

Query: 71  KSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKE 250
           K  D+LSTAIL+ K +PNRLIV+++  DDNSV+A+SQAKM++L LFRGD V+LKGK+RKE
Sbjct: 13  KKNDELSTAILKDKVKPNRLIVDQSEQDDNSVIAVSQAKMDELGLFRGDAVILKGKKRKE 72

Query: 251 TVA 259
           +VA
Sbjct: 73  SVA 75



 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/27 (55%), Positives = 19/27 (70%)
 Frame = +2

Query: 617 LKREEEXEALNAVGYX*HRRVVRKQLA 697
           +KREEE E++N +GY      VRKQLA
Sbjct: 195 IKREEEEESMNDIGYD-DLGGVRKQLA 220


>Z48334-9|CAA88314.1|  810|Caenorhabditis elegans Hypothetical
           protein C41C4.8 protein.
          Length = 810

 Score =  121 bits (292), Expect = 4e-28
 Identities = 60/133 (45%), Positives = 83/133 (62%)
 Frame = +1

Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402
           + +G+  +    IVL+ DNCP++KI+M             DVVSI+    ++YGKRVH+L
Sbjct: 64  ILKGKKRRETVSIVLNADNCPNDKIKMNKVVRNNLRSRLGDVVSISSA-QLEYGKRVHVL 122

Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFRSAGACAPSSSKWSKQIHHHFASWA 582
           PIDD++EGLTGNLF+V+L+PYF +AYRP+H+ D F    A      K  +         A
Sbjct: 123 PIDDTIEGLTGNLFDVFLRPYFTDAYRPVHKGDIFTVQAAMRTVEFKVVETDPAPACIVA 182

Query: 583 PDTVIHCDGEPIK 621
           PDTVIH +G+PIK
Sbjct: 183 PDTVIHYEGDPIK 195



 Score = 89.0 bits (211), Expect = 3e-18
 Identities = 40/63 (63%), Positives = 56/63 (88%)
 Frame = +2

Query: 71  KSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKE 250
           K  D+L+TAIL+ K RPNRLI++++ +DDNS+V LSQAKM++L LFRGD+V+LKGK+R+E
Sbjct: 13  KKNDELATAILKDKKRPNRLIIDQSDNDDNSMVMLSQAKMDELGLFRGDSVILKGKKRRE 72

Query: 251 TVA 259
           TV+
Sbjct: 73  TVS 75



 Score = 31.5 bits (68), Expect = 0.60
 Identities = 18/27 (66%), Positives = 19/27 (70%)
 Frame = +2

Query: 617 LKREEEXEALNAVGYX*HRRVVRKQLA 697
           +KREEE EALN VGY      VRKQLA
Sbjct: 194 IKREEEEEALNEVGYD-DLGGVRKQLA 219


>Z48045-12|CAA88105.1|  810|Caenorhabditis elegans Hypothetical
           protein C41C4.8 protein.
          Length = 810

 Score =  121 bits (292), Expect = 4e-28
 Identities = 60/133 (45%), Positives = 83/133 (62%)
 Frame = +1

Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402
           + +G+  +    IVL+ DNCP++KI+M             DVVSI+    ++YGKRVH+L
Sbjct: 64  ILKGKKRRETVSIVLNADNCPNDKIKMNKVVRNNLRSRLGDVVSISSA-QLEYGKRVHVL 122

Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFRSAGACAPSSSKWSKQIHHHFASWA 582
           PIDD++EGLTGNLF+V+L+PYF +AYRP+H+ D F    A      K  +         A
Sbjct: 123 PIDDTIEGLTGNLFDVFLRPYFTDAYRPVHKGDIFTVQAAMRTVEFKVVETDPAPACIVA 182

Query: 583 PDTVIHCDGEPIK 621
           PDTVIH +G+PIK
Sbjct: 183 PDTVIHYEGDPIK 195



 Score = 89.0 bits (211), Expect = 3e-18
 Identities = 40/63 (63%), Positives = 56/63 (88%)
 Frame = +2

Query: 71  KSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKE 250
           K  D+L+TAIL+ K RPNRLI++++ +DDNS+V LSQAKM++L LFRGD+V+LKGK+R+E
Sbjct: 13  KKNDELATAILKDKKRPNRLIIDQSDNDDNSMVMLSQAKMDELGLFRGDSVILKGKKRRE 72

Query: 251 TVA 259
           TV+
Sbjct: 73  TVS 75



 Score = 31.5 bits (68), Expect = 0.60
 Identities = 18/27 (66%), Positives = 19/27 (70%)
 Frame = +2

Query: 617 LKREEEXEALNAVGYX*HRRVVRKQLA 697
           +KREEE EALN VGY      VRKQLA
Sbjct: 194 IKREEEEEALNEVGYD-DLGGVRKQLA 219


>AF125450-3|AAD12817.1|  309|Caenorhabditis elegans Hypothetical
          protein Y39F10A.3 protein.
          Length = 309

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -2

Query: 85 IIRAFIICHFIQNLLLESKNYYNFY 11
          ++ AF++C  + N+LL SK+ Y FY
Sbjct: 8  LLLAFVVCLTLFNVLLWSKSNYGFY 32


>Z66562-5|CAA91466.1|  250|Caenorhabditis elegans Hypothetical
           protein F42E11.4 protein.
          Length = 250

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +2

Query: 50  LNKMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQL 199
           L K+  NK+ +DL T  LR++    +++ E  V+  N       AK+E +
Sbjct: 61  LRKLLMNKAAEDLKTQQLRKEQERVKVLAERTVALPNVDSIDDHAKLEAI 110


>AB107358-1|BAD89379.1|  250|Caenorhabditis elegans troponin I 1
           protein.
          Length = 250

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +2

Query: 50  LNKMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQL 199
           L K+  NK+ +DL T  LR++    +++ E  V+  N       AK+E +
Sbjct: 61  LRKLLMNKAAEDLKTQQLRKEQERVKVLAERTVALPNVDSIDDHAKLEAI 110


>Z12017-1|CAA78047.1|  458|Caenorhabditis elegans Hypothetical
           protein R08D7.1 protein.
          Length = 458

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/19 (68%), Positives = 13/19 (68%)
 Frame = -2

Query: 526 RMPPRT*RCRHDGSDGKPP 470
           R PPRT R RHD SD  PP
Sbjct: 178 RSPPRTRRDRHD-SDNSPP 195


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,418,782
Number of Sequences: 27780
Number of extensions: 348150
Number of successful extensions: 840
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)