Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30944.Seq
         (698 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g03340.1 68418.m00286 cell division cycle protein 48, putativ...   135   3e-32
At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)...   135   3e-32
At3g53230.1 68416.m05865 cell division cycle protein 48, putativ...   130   9e-31
At4g13885.1 68417.m02151 3'-5' exonuclease-related contains weak...    31   0.97 
At3g26630.1 68416.m03328 pentatricopeptide (PPR) repeat-containi...    30   1.3  
At4g21070.1 68417.m03047 BRCT domain-containing protein / zinc f...    29   2.2  
At2g33255.1 68415.m04075 haloacid dehalogenase-like hydrolase fa...    28   6.8  
At5g10520.1 68418.m01218 protein kinase family protein contains ...    27   9.0  
At1g49400.1 68414.m05537 ribosomal protein S17 family protein si...    27   9.0  
At1g10180.1 68414.m01148 expressed protein                             27   9.0  

>At5g03340.1 68418.m00286 cell division cycle protein 48, putative /
           CDC48, putative very strong similarity to SP|P54609 Cell
           division cycle protein 48 homolog {Arabidopsis
           thaliana}; contains Pfam profiles PF00004: ATPase AAA
           family, PF02359: Cell division protein 48 (CDC48)
           N-terminal domain; supporting cDNA
           gi|26449351|dbj|AK117125.1|
          Length = 810

 Score =  135 bits (326), Expect = 3e-32
 Identities = 62/133 (46%), Positives = 81/133 (60%)
 Frame = +1

Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402
           L +G+  +   CI L+D+ C + KIRM             DV+S+  CP VKYGKRVHIL
Sbjct: 62  LIKGKKRKDTVCIALADETCEEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGKRVHIL 121

Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFRSAGACAPSSSKWSKQIHHHFASWA 582
           P+DD+VEG+TGNLF+ YLKPYF+EAYRP+ + D F   G       K  +     +   A
Sbjct: 122 PVDDTVEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPAEYCVVA 181

Query: 583 PDTVIHCDGEPIK 621
           PDT I C+GEP+K
Sbjct: 182 PDTEIFCEGEPVK 194



 Score = 93.9 bits (223), Expect = 9e-20
 Identities = 42/65 (64%), Positives = 55/65 (84%)
 Frame = +2

Query: 62  ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 241
           +D+K+  D STAIL RK  PNRL+V+EA++DDNSVV+L    ME+LQLFRGDT+L+KGK+
Sbjct: 8   SDSKTKKDFSTAILERKKSPNRLVVDEAINDDNSVVSLHPTTMEKLQLFRGDTILIKGKK 67

Query: 242 RKETV 256
           RK+TV
Sbjct: 68  RKDTV 72


>At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)
           (CDC48) identical to SP|P54609 Cell division cycle
           protein 48 homolog {Arabidopsis thaliana}
          Length = 809

 Score =  135 bits (326), Expect = 3e-32
 Identities = 62/133 (46%), Positives = 81/133 (60%)
 Frame = +1

Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402
           L +G+  +   CI L+D+ C + KIRM             DV+S+  CP VKYGKRVHIL
Sbjct: 62  LIKGKKRKDTVCIALADETCEEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGKRVHIL 121

Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFRSAGACAPSSSKWSKQIHHHFASWA 582
           P+DD+VEG+TGNLF+ YLKPYF+EAYRP+ + D F   G       K  +     +   A
Sbjct: 122 PVDDTVEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPAEYCVVA 181

Query: 583 PDTVIHCDGEPIK 621
           PDT I C+GEP+K
Sbjct: 182 PDTEIFCEGEPVK 194



 Score = 96.7 bits (230), Expect = 1e-20
 Identities = 44/65 (67%), Positives = 56/65 (86%)
 Frame = +2

Query: 62  ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 241
           +D+KS  D STAIL RK  PNRL+V+EA++DDNSVV+L  A ME+LQLFRGDT+L+KGK+
Sbjct: 8   SDSKSKKDFSTAILERKKSPNRLVVDEAINDDNSVVSLHPATMEKLQLFRGDTILIKGKK 67

Query: 242 RKETV 256
           RK+TV
Sbjct: 68  RKDTV 72


>At3g53230.1 68416.m05865 cell division cycle protein 48, putative /
           CDC48, putative very strong similarity to SP|P54609 Cell
           division cycle protein 48 homolog {Arabidopsis
           thaliana}; contains Pfam profiles PF00004: ATPase AAA
           family, PF02359: Cell division protein 48 (CDC48)
           N-terminal domain
          Length = 815

 Score =  130 bits (314), Expect = 9e-31
 Identities = 59/133 (44%), Positives = 80/133 (60%)
 Frame = +1

Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402
           L +G+  +   CI L+D+ C + KIRM             DV+S+  CP VKYG RVHIL
Sbjct: 63  LIKGKKRKDTVCIALADETCDEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGNRVHIL 122

Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFRSAGACAPSSSKWSKQIHHHFASWA 582
           P+DD++EG++GN+F+ YLKPYF+EAYRP+ + D F   G       K  +     +   A
Sbjct: 123 PLDDTIEGVSGNIFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSIEFKVIETDPAEYCVVA 182

Query: 583 PDTVIHCDGEPIK 621
           PDT I C+GEPIK
Sbjct: 183 PDTEIFCEGEPIK 195



 Score = 84.2 bits (199), Expect = 7e-17
 Identities = 40/66 (60%), Positives = 54/66 (81%), Gaps = 1/66 (1%)
 Frame = +2

Query: 62  ADNK-SPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGK 238
           +D+K +  D STAIL +K   NRL+V+EA++DDNSVV+L    ME+LQLFRGDT+L+KGK
Sbjct: 8   SDSKGTKKDFSTAILEKKKAANRLVVDEAINDDNSVVSLHPDTMEKLQLFRGDTILIKGK 67

Query: 239 RRKETV 256
           +RK+TV
Sbjct: 68  KRKDTV 73


>At4g13885.1 68417.m02151 3'-5' exonuclease-related contains weak
           similarity to Pfam domain PF01612: 3'-5' exonuclease
          Length = 263

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 13/23 (56%), Positives = 18/23 (78%)
 Frame = -2

Query: 214 TTEELKLLHFGL*KCHD*VVIAD 146
           TTEELK+ H+ L KC D +V+A+
Sbjct: 3   TTEELKISHYKLYKCFDFLVVAN 25


>At3g26630.1 68416.m03328 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile: PF01535 PPR repeat
          Length = 455

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -3

Query: 369 RTRSDGYHIRKTHTKVVSHNTVHPNFLIRAII 274
           RT S+   +++ HTK++ HN  +   L+R +I
Sbjct: 28  RTCSNFSQLKQIHTKIIKHNLTNDQLLVRQLI 59


>At4g21070.1 68417.m03047 BRCT domain-containing protein / zinc finger
            (C3HC4-type RING finger) family protein (BRCA1) contains
            Pfam profiles PF00533: BRCA1 C Terminus (BRCT) domain,
            PF00097: Zinc finger, C3HC4 type (RING finger), PF01535:
            PPR repeat; identical to cDNA BRCA1 GI:28372473
          Length = 1276

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
 Frame = +1

Query: 556  IHHHFASWAPD------TVIHCDGEPIKT*GRRXSTKCCRLXMTSAGC 681
            +H + A WAP+      T+++ D E  ++  RR S  CC L   + GC
Sbjct: 936  VHKNCAEWAPNVYFNDLTIVNLDVELTRS--RRISCSCCGLKGAALGC 981


>At2g33255.1 68415.m04075 haloacid dehalogenase-like hydrolase
           family protein contains InterPro accession IPR005834:
           Haloacid dehalogenase-like hydrolase
          Length = 224

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +1

Query: 466 FMEAYRPIHRDDTFRSAGACAPSSSKWSKQIHHHFASWAPD 588
           F   YR +  +D ++   A +PS       I HH  SW+PD
Sbjct: 30  FAAMYRAVLGEDAYKRIKAESPSGI----DILHHIESWSPD 66


>At5g10520.1 68418.m01218 protein kinase family protein contains
           protein kinase domain, INTERPRO:IPR000719
          Length = 467

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +3

Query: 57  KWQIIKALMIYR-PRSSVARTDPTVSLSKKQSAMTTQSWHFHRPKWSNF 200
           ++ +I  L  Y   R ++ R  P   L+  +SA T +++   +P W NF
Sbjct: 95  RFSVIPLLASYELTRKNLRRKQP--KLTPSESAFTCEAFFMAKPSWRNF 141


>At1g49400.1 68414.m05537 ribosomal protein S17 family protein
           similar to 40S ribosomal protein S17 GI:1620985 from
           [Nicotiana plumbaginifolia]
          Length = 116

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 18/44 (40%), Positives = 23/44 (52%)
 Frame = +3

Query: 36  SNNKF*IKWQIIKALMIYRPRSSVARTDPTVSLSKKQSAMTTQS 167
           S NK  I  +IIK   IY P+++ A    + S S   SA TT S
Sbjct: 64  SKNKHWIVAEIIKKARIYSPKAAAAAVSASASAS---SASTTDS 104


>At1g10180.1 68414.m01148 expressed protein
          Length = 769

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = +2

Query: 182 AKMEQLQLFRGDTVLLKGKRRKETVASCSQTII 280
           +K++QL +  GD +L K K +K  +A  ++T+I
Sbjct: 576 SKLQQLAIIAGDVLLGKEKLQKILLARLTETVI 608


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,433,057
Number of Sequences: 28952
Number of extensions: 321568
Number of successful extensions: 809
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)