Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30943.Seq
(698 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 153 2e-38
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 83 5e-17
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 82 9e-17
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 80 3e-16
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 77 3e-15
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 76 6e-15
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 67 2e-12
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 62 1e-10
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 37 0.003
SPCC18.09c |||conserved eukaryotic protein|Schizosaccharomyces p... 27 2.0
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 27 2.6
SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter |Schizo... 27 3.4
SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomy... 27 3.4
SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomy... 26 6.0
SPCC4G3.05c |mus81||Holliday junction resolvase subunit Mus81|Sc... 25 7.9
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar... 25 7.9
SPBC16H5.14c ||SPBC21H7.08|short chain dehydrogenase DHRS family... 25 7.9
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 153 bits (371), Expect = 2e-38
Identities = 82/150 (54%), Positives = 106/150 (70%)
Frame = +3
Query: 249 IKMLEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 428
+ +L+VEHPA KVLVELAQ QD+EVGDGTTSVVIIAAELL+ A+ELVK KIHPT+II+GY
Sbjct: 67 LSLLDVEHPAGKVLVELAQQQDKEVGDGTTSVVIIAAELLRRANELVKNKIHPTTIITGY 126
Query: 429 RLACKEAVKYIQDNLTVTVESLGRPSLSTQPKQPCHLN*LELMQISSRRWL*MLHRAIKT 608
RLA +EAVK++ D L+ +V+SLG+ SL K + ++KT
Sbjct: 127 RLAIREAVKFMTDVLSCSVDSLGKESLINVAKTSMSSKIIGNDSDFFSTMAVDAMLSVKT 186
Query: 609 MNPRGNTIYPIQAINILKAPGRSAXGSVLV 698
N +G T YP++A+NILKA G+S+ SVLV
Sbjct: 187 SNSKGETRYPVKAVNILKAHGKSSRESVLV 216
Score = 75.8 bits (178), Expect = 6e-15
Identities = 36/39 (92%), Positives = 37/39 (94%)
Frame = +1
Query: 136 AAAAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATIL 252
A AIAN+VKSSLGPVGLDKMLVDDIGDVTVTNDGATIL
Sbjct: 29 ATTAIANVVKSSLGPVGLDKMLVDDIGDVTVTNDGATIL 67
Score = 44.4 bits (100), Expect = 2e-05
Identities = 20/27 (74%), Positives = 23/27 (85%)
Frame = +2
Query: 509 INTAKTTMSSKLIGADADFFSEMVVDA 589
IN AKT+MSSK+IG D+DFFS M VDA
Sbjct: 154 INVAKTSMSSKIIGNDSDFFSTMAVDA 180
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 82.6 bits (195), Expect = 5e-17
Identities = 37/68 (54%), Positives = 53/68 (77%)
Frame = +3
Query: 249 IKMLEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 428
+K + +++ AAKVLV ++++QD+EVGDGTTSV + AAELL+ A+ +V KIHP II GY
Sbjct: 67 LKSIALDNAAAKVLVNISKVQDDEVGDGTTSVCVFAAELLRQAEIMVNAKIHPQVIIDGY 126
Query: 429 RLACKEAV 452
R+A K A+
Sbjct: 127 RIATKTAI 134
Score = 50.8 bits (116), Expect = 2e-07
Identities = 24/40 (60%), Positives = 32/40 (80%), Gaps = 1/40 (2%)
Frame = +1
Query: 139 AAAIANIVKSSLGPVGLDKML-VDDIGDVTVTNDGATILK 255
A A+ ++VKS+LGP G+DK+L + GD+ VTNDGATILK
Sbjct: 29 AIAVGDLVKSTLGPKGMDKILQSNSSGDIVVTNDGATILK 68
Score = 29.9 bits (64), Expect = 0.37
Identities = 11/26 (42%), Positives = 20/26 (76%)
Frame = +2
Query: 512 NTAKTTMSSKLIGADADFFSEMVVDA 589
N A+TT+SSK++ + + F+++ VDA
Sbjct: 157 NIARTTLSSKILSQNKNHFAQLAVDA 182
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 81.8 bits (193), Expect = 9e-17
Identities = 39/79 (49%), Positives = 57/79 (72%)
Frame = +3
Query: 249 IKMLEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 428
++ +EV HPAAK ++ELA+ QDEEVGDGTTSV+I+A E+L A L+ KIHP +I +
Sbjct: 65 LREIEVAHPAAKSMIELARTQDEEVGDGTTSVIILAGEILAAASPLLDRKIHPVVMIRSF 124
Query: 429 RLACKEAVKYIQDNLTVTV 485
+ A ++A+ I D +T+ V
Sbjct: 125 KQALEDALSII-DEITLPV 142
Score = 45.6 bits (103), Expect = 7e-06
Identities = 19/40 (47%), Positives = 30/40 (75%)
Frame = +1
Query: 136 AAAAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILK 255
AA A+A+++++ LGP + KML+D +G V +TNDG IL+
Sbjct: 27 AAKAVADVIRTCLGPRAMLKMLLDPVGSVLLTNDGHAILR 66
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 80.2 bits (189), Expect = 3e-16
Identities = 35/71 (49%), Positives = 51/71 (71%)
Frame = +3
Query: 249 IKMLEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 428
+ +EVEH AK+LV+L++ QD+E+GDGTT VV++A LL+ A+ L+ IHP I GY
Sbjct: 80 LDQMEVEHQIAKLLVQLSKSQDDEIGDGTTGVVVLAGALLEQAEALIDKGIHPIRIADGY 139
Query: 429 RLACKEAVKYI 461
AC+ AVK++
Sbjct: 140 EKACQVAVKHL 150
Score = 56.4 bits (130), Expect = 4e-09
Identities = 25/39 (64%), Positives = 32/39 (82%)
Frame = +1
Query: 136 AAAAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATIL 252
A +ANIV++SLGP GLDK+L+ G++TVTNDGATIL
Sbjct: 42 ATKTVANIVRTSLGPRGLDKILISPDGEITVTNDGATIL 80
Score = 25.4 bits (53), Expect = 7.9
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +2
Query: 515 TAKTTMSSKLIGADADFFSEMVVDA 589
+AKT++ SK++ D F+ + VDA
Sbjct: 170 SAKTSLGSKVVSKAHDHFANIAVDA 194
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 76.6 bits (180), Expect = 3e-15
Identities = 52/141 (36%), Positives = 77/141 (54%)
Frame = +3
Query: 249 IKMLEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 428
+K L V HPAAK+LV+L+ QD E GDGTTSVVI+A +L A++L+K IHPT I +
Sbjct: 65 LKHLSVLHPAAKMLVDLSAAQDVEAGDGTTSVVILAGSMLACAEKLLKKGIHPTVIAESF 124
Query: 429 RLACKEAVKYIQDNLTVTVESLGRPSLSTQPKQPCHLN*LELMQISSRRWL*MLHRAIKT 608
+ A V +++N + +E R SL LN + Q S+ + +K
Sbjct: 125 QRAAGFTVDCMKEN-ALAIELSDRESLLR--AATTSLNSKIVSQYSNLLAPIAVDAVLKV 181
Query: 609 MNPRGNTIYPIQAINILKAPG 671
++PR T ++ I I+K G
Sbjct: 182 IDPRVATNVDLKDIRIVKKLG 202
Score = 50.8 bits (116), Expect = 2e-07
Identities = 22/40 (55%), Positives = 32/40 (80%)
Frame = +1
Query: 136 AAAAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILK 255
AA ++A+ +++SLGP G+DKM+ G+V +TNDGATILK
Sbjct: 27 AARSVADAIRTSLGPKGMDKMIQTGKGEVILTNDGATILK 66
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 75.8 bits (178), Expect = 6e-15
Identities = 37/73 (50%), Positives = 51/73 (69%)
Frame = +3
Query: 249 IKMLEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 428
+K+L++ HPAAK LV++A+ QD EVGDGTTSVV+ A ELL+ A V+ + II GY
Sbjct: 70 MKLLDIVHPAAKTLVDIARAQDAEVGDGTTSVVVFAGELLREARTFVEDGVSSHLIIRGY 129
Query: 429 RLACKEAVKYIQD 467
R A + AV I++
Sbjct: 130 RKAAQLAVNKIKE 142
Score = 53.2 bits (122), Expect = 3e-08
Identities = 20/40 (50%), Positives = 33/40 (82%)
Frame = +1
Query: 136 AAAAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILK 255
A A+ + ++++LGP+G DK++VDD G+V ++NDGATI+K
Sbjct: 32 ACVAVQDTIRTTLGPLGADKLMVDDRGEVVISNDGATIMK 71
Score = 31.9 bits (69), Expect = 0.091
Identities = 14/24 (58%), Positives = 20/24 (83%)
Frame = +2
Query: 518 AKTTMSSKLIGADADFFSEMVVDA 589
A T M+SKLI +++ FF++MVVDA
Sbjct: 163 ASTAMNSKLIRSNSTFFTKMVVDA 186
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 67.3 bits (157), Expect = 2e-12
Identities = 40/151 (26%), Positives = 77/151 (50%), Gaps = 1/151 (0%)
Frame = +3
Query: 249 IKMLEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 428
I+ LEV HPAAK++V+ Q Q+ E+GD VV+ ELL A+ +++ + P I GY
Sbjct: 72 IRELEVIHPAAKLVVDATQQQENELGDAANFVVVFTGELLAKAENMIRMGLTPLEIAKGY 131
Query: 429 RLACKEAVKYIQDNLTVTVESLGRPSLSTQPKQPCHLN*LELMQISSRRWL-*MLHRAIK 605
+A ++ +++ +E++ + + C + Q + +L ++ +AI
Sbjct: 132 EMALSHTMEVLEEICADKIETVESEKELIKAIRTC----ISSKQYGNEDFLSDLVAKAIL 187
Query: 606 TMNPRGNTIYPIQAINILKAPGRSAXGSVLV 698
T+ P+ + + + I ++K G S S +V
Sbjct: 188 TVLPKDPSKFNVDNIRVVKIMGSSLYNSQVV 218
Score = 35.5 bits (78), Expect = 0.007
Identities = 15/40 (37%), Positives = 27/40 (67%)
Frame = +1
Query: 136 AAAAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILK 255
A ++ I ++SLGP G +K++V+ + +TND ATI++
Sbjct: 34 AIRELSEITRTSLGPNGKNKIVVNHLQQTFLTNDAATIIR 73
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 61.7 bits (143), Expect = 1e-10
Identities = 25/68 (36%), Positives = 44/68 (64%)
Frame = +3
Query: 258 LEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLA 437
+++++P A + + A QD+ GDGTTSV ++ ELLK A+ ++ +HP+ I G+ LA
Sbjct: 65 MQIQNPTASCIAKAATAQDDATGDGTTSVCLLVGELLKQAELYIREGLHPSLISDGFNLA 124
Query: 438 CKEAVKYI 461
EA+ ++
Sbjct: 125 KNEALTFL 132
Score = 42.3 bits (95), Expect = 6e-05
Identities = 18/39 (46%), Positives = 26/39 (66%)
Frame = +1
Query: 136 AAAAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATIL 252
AA + +++KS+LGP G KMLVD G + +T DG +L
Sbjct: 24 AAIGLQDVLKSNLGPTGTTKMLVDGAGAIKLTKDGKVLL 62
>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
Length = 582
Score = 36.7 bits (81), Expect = 0.003
Identities = 17/68 (25%), Positives = 34/68 (50%)
Frame = +3
Query: 267 EHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACKE 446
E+ A+++ ++A +E GDGTT+ ++ + V +P + G +LA
Sbjct: 98 ENLGARLVQDVASKTNEVAGDGTTTATVLTRAIFSETVRNVAAGCNPMDLRRGIQLAVDN 157
Query: 447 AVKYIQDN 470
V+++Q N
Sbjct: 158 VVEFLQAN 165
Score = 27.5 bits (58), Expect = 2.0
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +1
Query: 148 IANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILK 255
+A V +LGP G + ++ G +T DG T+ +
Sbjct: 54 LARAVSVTLGPKGRNVLIDQPFGSPKITKDGVTVAR 89
>SPCC18.09c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 232
Score = 27.5 bits (58), Expect = 2.0
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +3
Query: 393 TKIHPTSIISGYRLACKEAVKYIQDNLTVTVESLGRPSLSTQ 518
T +HP I+ +R ++ V Y+Q +L+ + R LS Q
Sbjct: 82 THVHPLEIMMKHRSLVEKLVSYVQGDLSGLIFDEARNCLSQQ 123
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 27.1 bits (57), Expect = 2.6
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = +3
Query: 336 TSVVIIAAELLKNADELVKTKIHPTSIISGY 428
T++++++ LL E + TK+HP+ +S Y
Sbjct: 302 TNLIVVSVALLHQWAEELSTKVHPSKKLSVY 332
>SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 572
Score = 26.6 bits (56), Expect = 3.4
Identities = 7/18 (38%), Positives = 14/18 (77%)
Frame = +2
Query: 167 APLGQLVWIRCWLTILGM 220
+PL +++W+ CW +LG+
Sbjct: 149 SPLSKMMWVFCWRWLLGV 166
>SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 573
Score = 26.6 bits (56), Expect = 3.4
Identities = 7/18 (38%), Positives = 14/18 (77%)
Frame = +2
Query: 167 APLGQLVWIRCWLTILGM 220
+PL +++W+ CW +LG+
Sbjct: 149 SPLSKMMWVFCWRWLLGV 166
>SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 559
Score = 25.8 bits (54), Expect = 6.0
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +2
Query: 170 PLGQLVWIRCWLTILGM 220
PLG+++WI W +LG+
Sbjct: 145 PLGKMMWIFAWRWLLGL 161
>SPCC4G3.05c |mus81||Holliday junction resolvase subunit
Mus81|Schizosaccharomyces pombe|chr 3|||Manual
Length = 608
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/42 (28%), Positives = 17/42 (40%)
Frame = -1
Query: 698 DKYTSXCTPPGGFQNVNSLDRVYSISSGVHCFDCPVQHLQPS 573
D +S C PP ++N +H CPV H + S
Sbjct: 229 DHDSSLCQPPNFVTSINKAGSSSDHGGELHVTYCPVDHNEVS 270
>SPAC13G6.06c |||glycine cleavage complex subunit
P|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1017
Score = 25.4 bits (53), Expect = 7.9
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = +3
Query: 300 AQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACKEAVKYIQDNLT 476
A L DE G V+++A + K LV I+P ++ A +K DN+T
Sbjct: 192 ASLLDEGTAAGEAMVMLMANDKKKRKTFLVDKNIYPNTLSVLRTRASGFGIKIELDNIT 250
>SPBC16H5.14c ||SPBC21H7.08|short chain dehydrogenase DHRS family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 286
Score = 25.4 bits (53), Expect = 7.9
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = -3
Query: 222 NIPNIVNQHLIQTNWPKGALYYVCYSRCCPLHFVFSLGLRRILSL 88
N+ I+ Q+L TN G YY Y+R PL F L ++++ L
Sbjct: 235 NLAKIIIQNLY-TN-KSGRFYYPFYARFMPLLRFFPLPIQKLARL 277
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,829,492
Number of Sequences: 5004
Number of extensions: 55442
Number of successful extensions: 161
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -