Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30943.Seq
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)                   87   1e-17
SB_25097| Best HMM Match : No HMM Matches (HMM E-Value=.)              81   1e-15
SB_25096| Best HMM Match : No HMM Matches (HMM E-Value=.)              80   2e-15
SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)                  79   5e-15
SB_57454| Best HMM Match : DUF924 (HMM E-Value=1)                      70   2e-12
SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)               64   1e-10
SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8)              53   2e-07
SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086)              47   1e-05
SB_30876| Best HMM Match : Ribosomal_S16 (HMM E-Value=7.1)             39   0.003
SB_56262| Best HMM Match : Cpn60_TCP1 (HMM E-Value=6.6e-15)            36   0.024
SB_3351| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.51 
SB_29096| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_49248| Best HMM Match : Cpn60_TCP1 (HMM E-Value=1.6)                29   4.8  
SB_56071| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_25900| Best HMM Match : fn3 (HMM E-Value=2e-17)                     28   6.3  
SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  

>SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
          Length = 531

 Score = 87.4 bits (207), Expect = 1e-17
 Identities = 37/72 (51%), Positives = 59/72 (81%)
 Frame = +3

Query: 249 IKMLEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 428
           +K + +++PAAK+LVEL+++QD+EVGDGTTSV ++ +ELLK A++LV  KIHP +I++G+
Sbjct: 68  LKSIGIDNPAAKILVELSKVQDDEVGDGTTSVTVLTSELLKEAEKLVSCKIHPQTIVAGW 127

Query: 429 RLACKEAVKYIQ 464
           R + K A K ++
Sbjct: 128 RKSVKAAEKALE 139



 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 24/41 (58%), Positives = 31/41 (75%), Gaps = 2/41 (4%)
 Frame = +1

Query: 139 AAAIANIVKSSLGPVGLDKML--VDDIGDVTVTNDGATILK 255
           A AI ++VKS+LGP G+DK+L      G++ VTNDGATILK
Sbjct: 29  AIAIGDLVKSTLGPKGMDKILQSFGQNGNIQVTNDGATILK 69



 Score = 31.5 bits (68), Expect = 0.68
 Identities = 14/39 (35%), Positives = 25/39 (64%)
 Frame = +2

Query: 473 HSNSRVTWQAVSINTAKTTMSSKLIGADADFFSEMVVDA 589
           HS+    ++   +N A+TT+SSK++    D F+++ VDA
Sbjct: 145 HSSDPEKFREDLMNIARTTLSSKILVQHRDHFAKLAVDA 183


>SB_25097| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 118

 Score = 80.6 bits (190), Expect = 1e-15
 Identities = 32/75 (42%), Positives = 56/75 (74%)
 Frame = +3

Query: 249 IKMLEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 428
           ++ ++V+HPAAK ++E+++ QDEEVGDGTTSV+I+A E +  A+  ++ ++HPT II+ Y
Sbjct: 9   LREIQVKHPAAKSMIEISRTQDEEVGDGTTSVIILAGEFMSVAEPFLEQQMHPTQIIAAY 68

Query: 429 RLACKEAVKYIQDNL 473
           RLA  + +  ++  +
Sbjct: 69  RLAMDDMIDILKQQI 83


>SB_25096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 315

 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 32/72 (44%), Positives = 54/72 (75%)
 Frame = +3

Query: 258 LEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLA 437
           ++V+HPAAK ++E+++ QDEEVGDGTTSV+I+A E +  A+  ++ ++HPT II+ YRLA
Sbjct: 209 IQVKHPAAKSMIEISRTQDEEVGDGTTSVIILAGEFMSVAEPFLEQQMHPTQIIAAYRLA 268

Query: 438 CKEAVKYIQDNL 473
             + +  ++  +
Sbjct: 269 MDDMIDILKQQI 280


>SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
          Length = 505

 Score = 78.6 bits (185), Expect = 5e-15
 Identities = 42/93 (45%), Positives = 63/93 (67%), Gaps = 6/93 (6%)
 Frame = +3

Query: 255 MLEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRL 434
           M+EV+H  AK++VEL++ QD E+GDGTT VV++A  LL++A++L+   IHP  I  GY L
Sbjct: 78  MMEVDHQIAKLMVELSKSQDNEIGDGTTGVVVLAGALLEHAEQLLDWGIHPIRIADGYEL 137

Query: 435 ACKEAVKY---IQDNLTV---TVESLGRPSLST 515
           A K A+++   I DN  V     ESL + +++T
Sbjct: 138 AAKIALEHMDSIADNFPVDKDNKESLIQTAMTT 170



 Score = 58.8 bits (136), Expect = 4e-09
 Identities = 27/39 (69%), Positives = 34/39 (87%)
 Frame = +1

Query: 136 AAAAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATIL 252
           AA A+A+I+K+SLGP G+DKM+V   G+VTVTNDGATIL
Sbjct: 38  AARAVASILKTSLGPKGMDKMMVSPDGEVTVTNDGATIL 76


>SB_57454| Best HMM Match : DUF924 (HMM E-Value=1)
          Length = 144

 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 30/56 (53%), Positives = 46/56 (82%)
 Frame = +3

Query: 297 LAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACKEAVKYIQ 464
           L+++QD+EVGDGTTSV ++A+ELLK A++LV  KIHP +I++G+R + K A K ++
Sbjct: 2   LSKVQDDEVGDGTTSVTVLASELLKEAEKLVSCKIHPQTIVAGWRKSVKAAEKALE 57



 Score = 31.1 bits (67), Expect = 0.90
 Identities = 14/39 (35%), Positives = 25/39 (64%)
 Frame = +2

Query: 473 HSNSRVTWQAVSINTAKTTMSSKLIGADADFFSEMVVDA 589
           HS+    ++   +N A+TT+SSK++    D F+++ VDA
Sbjct: 63  HSSDPEKFRDDLMNIARTTLSSKILVQHRDHFAKLAVDA 101


>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 27/75 (36%), Positives = 48/75 (64%)
 Frame = +3

Query: 243 HNIKMLEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIIS 422
           + ++  +++HP A ++  +A  QD+  GDGTTS V+I  ELLK AD  V   +HP  +  
Sbjct: 164 NGVQNSQIQHPTASLIARVATAQDDITGDGTTSNVMIIGELLKQADLYVSEGLHPRLVTE 223

Query: 423 GYRLACKEAVKYIQD 467
           G+ +A K+A++ +++
Sbjct: 224 GFEVAKKKALEVLEE 238


>SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8)
          Length = 186

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 23/38 (60%), Positives = 31/38 (81%)
 Frame = +1

Query: 136 AAAAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATI 249
           AA A+A+ +++SLGP G+DKM+    GDVT+TNDGATI
Sbjct: 32  AAKAVADAIRTSLGPKGMDKMIQGGNGDVTITNDGATI 69


>SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086)
          Length = 724

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 20/39 (51%), Positives = 30/39 (76%)
 Frame = +1

Query: 136 AAAAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATIL 252
           A   IA+ V+++LGP G+DK++VD  G  T++NDGATI+
Sbjct: 663 ACQFIADAVRTTLGPRGMDKLIVDGRGKATISNDGATII 701



 Score = 32.7 bits (71), Expect = 0.29
 Identities = 13/24 (54%), Positives = 19/24 (79%)
 Frame = +3

Query: 249 IKMLEVEHPAAKVLVELAQLQDEE 320
           I +L++ HPAAK LV++A+ QD E
Sbjct: 701 INLLDIVHPAAKTLVDIAKSQDAE 724


>SB_30876| Best HMM Match : Ribosomal_S16 (HMM E-Value=7.1)
          Length = 131

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
 Frame = +2

Query: 509 INTAKTTMSSKLIGADADFFSEMVVDA--AQGNQNNEPQRKYYI 634
           ++ A T +SSKLIG   DFF+ M+VDA  A     N+ + KY I
Sbjct: 14  VSAANTALSSKLIGQQGDFFANMIVDAVMAVKRTGNKGEAKYPI 57



 Score = 37.9 bits (84), Expect = 0.008
 Identities = 18/34 (52%), Positives = 23/34 (67%)
 Frame = +3

Query: 597 AIKTMNPRGNTIYPIQAINILKAPGRSAXGSVLV 698
           A+K    +G   YPI+AIN+LKA G SA  S+LV
Sbjct: 43  AVKRTGNKGEAKYPIKAINVLKAHGGSAKESILV 76


>SB_56262| Best HMM Match : Cpn60_TCP1 (HMM E-Value=6.6e-15)
          Length = 563

 Score = 36.3 bits (80), Expect = 0.024
 Identities = 16/33 (48%), Positives = 22/33 (66%)
 Frame = +1

Query: 157 IVKSSLGPVGLDKMLVDDIGDVTVTNDGATILK 255
           I+K S GP GLD ML    G++ +TN G+ IL+
Sbjct: 15  ILKKSFGPNGLDVMLRSSSGNILITNSGSMILE 47


>SB_3351| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 175

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 14/24 (58%), Positives = 18/24 (75%)
 Frame = +2

Query: 518 AKTTMSSKLIGADADFFSEMVVDA 589
           A T +SSKLI    +FF++MVVDA
Sbjct: 28  AATALSSKLIATQKEFFAKMVVDA 51


>SB_29096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 41

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = +3

Query: 360 ELLKNADELVKTKIHPTSIISGYRLACKEAVKYIQDNL 473
           E +  A+  ++ ++HPT II+ YRLA  + +  ++  +
Sbjct: 3   EFMSVAEPFLEQQMHPTQIIAAYRLAMDDMIDILKQQI 40


>SB_49248| Best HMM Match : Cpn60_TCP1 (HMM E-Value=1.6)
          Length = 278

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 148 IANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILK 255
           +A+ V  +LGP G + ++    G   +T DG T+ K
Sbjct: 79  LADAVAVTLGPKGKNVIIEQSFGGPKITKDGVTVAK 114



 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = +3

Query: 279 AKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIIS 422
           A+++ ++A   +EE GDGTT+  ++A  +       V    +P  + S
Sbjct: 127 ARLVQDVANNTNEEAGDGTTTATVLARSIATEGFLHVSKGANPQEVSS 174


>SB_56071| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 856

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 602 DCPVQHLQPSPRRNLHQL 549
           DCP++ +QP P  NL Q+
Sbjct: 262 DCPLRQIQPQPPENLQQI 279


>SB_25900| Best HMM Match : fn3 (HMM E-Value=2e-17)
          Length = 197

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +3

Query: 312 DEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACKEAVKYI 461
           DE+V DG     I+AAE + +    +     PTS+ +GY +A    V+ I
Sbjct: 98  DEDVPDGAP---IVAAEAVNSTSLRINCTTLPTSVANGYVIAFNVYVESI 144


>SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2174

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -3

Query: 600  LPCAASTTISEKKSASAPISL-DDMVVLAVLIETACQVT 487
            LPC AST +S  +S S   S+  D VVLA  + +  + T
Sbjct: 1203 LPCTASTPVSHDQSPSTLSSIQQDSVVLATRLVSTSEST 1241


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,737,365
Number of Sequences: 59808
Number of extensions: 444073
Number of successful extensions: 958
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 957
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)