Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30943.Seq
(698 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit / TCP... 151 4e-37
At5g20890.1 68418.m02481 chaperonin, putative similar to SWISS-P... 90 1e-18
At3g11830.1 68416.m01450 chaperonin, putative similar to SWISS-P... 80 2e-15
At3g03960.1 68416.m00415 chaperonin, putative similar to SWISS-P... 79 4e-15
At5g26360.1 68418.m03151 chaperonin, putative similar to SWISS-P... 74 1e-13
At3g18190.1 68416.m02314 chaperonin, putative similar to SWISS-P... 72 3e-13
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 69 4e-12
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 67 9e-12
At5g16070.1 68418.m01878 chaperonin, putative similar to SWISS-P... 57 1e-08
At3g02530.1 68416.m00241 chaperonin, putative similar to SWISS-P... 56 2e-08
At5g18820.1 68418.m02236 chaperonin, putative similar to SWISS-P... 43 2e-04
At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha s... 36 0.026
At5g56500.1 68418.m07051 chaperonin, putative similar to SWISS-P... 34 0.079
At3g13470.1 68416.m01695 chaperonin, putative similar SWISS-PROT... 33 0.18
At1g55490.2 68414.m06348 RuBisCO subunit binding-protein beta su... 33 0.24
At1g55490.1 68414.m06347 RuBisCO subunit binding-protein beta su... 33 0.24
At1g26230.1 68414.m03200 chaperonin, putative similar to SWISS-P... 31 0.73
At3g13860.1 68416.m01751 chaperonin, putative similar to SWISS-P... 30 1.7
At3g23990.1 68416.m03013 chaperonin (CPN60) (HSP60) identical to... 29 3.0
At2g33210.1 68415.m04069 chaperonin, putative similar to SWISS-P... 29 3.0
At1g79060.1 68414.m09218 expressed protein 28 6.8
At3g16200.1 68416.m02045 expressed protein 27 9.0
>At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit /
TCP-1-alpha / chaperonin (CCT1) identical to
SWISS-PROT:P28769- T-complex protein 1, alpha subunit
(TCP-1-alpha) [Arabidopsis thaliana]
Length = 545
Score = 151 bits (366), Expect = 4e-37
Identities = 97/214 (45%), Positives = 118/214 (55%)
Frame = +3
Query: 57 MSTIAAPLSVAGTRSCGDPVRTQNVMGSSGYSKHSKELPWASWSG*DAG*RYWGCYSH*R 236
MS A ++G R G VRTQNVM S K
Sbjct: 1 MSISAQNPDISGDRQSGQDVRTQNVMACQAVSNIVKTSLGPVGLDKMLVDDIGDVTITND 60
Query: 237 WCHNIKMLEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSI 416
++MLEVEHPAAKVLVELA+LQD EVGDGTTSVVI+AAELLK A++LV+ KIHPTSI
Sbjct: 61 GATILRMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSI 120
Query: 417 ISGYRLACKEAVKYIQDNLTVTVESLGRPSLSTQPKQPCHLN*LELMQISSRRWL*MLHR 596
ISGYRLA +E+ KYI++ L VE LG+ L K + +
Sbjct: 121 ISGYRLAMRESCKYIEEKLVTKVEKLGKVPLINCAKTSMSSKLISGDSDFFANLVVEAVL 180
Query: 597 AIKTMNPRGNTIYPIQAINILKAPGRSAXGSVLV 698
++K N RG YPI+ INILKA G+SA S L+
Sbjct: 181 SVKMTNQRGEIKYPIKGINILKAHGQSARDSYLL 214
Score = 73.3 bits (172), Expect = 1e-13
Identities = 33/40 (82%), Positives = 38/40 (95%)
Frame = +1
Query: 136 AAAAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILK 255
A A++NIVK+SLGPVGLDKMLVDDIGDVT+TNDGATIL+
Sbjct: 27 ACQAVSNIVKTSLGPVGLDKMLVDDIGDVTITNDGATILR 66
>At5g20890.1 68418.m02481 chaperonin, putative similar to
SWISS-PROT:P78371- T-complex protein 1, beta subunit
(TCP-1-beta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 527
Score = 89.8 bits (213), Expect = 1e-18
Identities = 38/63 (60%), Positives = 57/63 (90%)
Frame = +3
Query: 249 IKMLEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 428
+K L +++PAAKVLV+++++QD+EVGDGTTSVV++A ELL+ A++LV +KIHP +II+GY
Sbjct: 66 LKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVASKIHPMTIIAGY 125
Query: 429 RLA 437
R+A
Sbjct: 126 RMA 128
Score = 45.6 bits (103), Expect = 3e-05
Identities = 26/42 (61%), Positives = 32/42 (76%), Gaps = 3/42 (7%)
Frame = +1
Query: 139 AAAIANIVKSSLGPVGLDKMLVDDIG---DVTVTNDGATILK 255
A AI+++VKS+LGP G+DK+L G VTVTNDGATILK
Sbjct: 27 AMAISDLVKSTLGPKGMDKIL-QSTGRGHAVTVTNDGATILK 67
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +2
Query: 509 INTAKTTMSSKLIGADADFFSEMVVDA 589
+ A TT+ SK++ D + F+EM VDA
Sbjct: 155 LKIAMTTLCSKILSQDKEHFAEMAVDA 181
>At3g11830.1 68416.m01450 chaperonin, putative similar to
SWISS-PROT:P80313 T-complex protein 1, eta subunit
(TCP-1-eta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 557
Score = 79.8 bits (188), Expect = 2e-15
Identities = 36/80 (45%), Positives = 58/80 (72%)
Frame = +3
Query: 249 IKMLEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 428
+K+L++ HPAAK+LV++A+ QD EVGDGTT+VV++AAE LK A ++ +H ++I Y
Sbjct: 69 MKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLKEAKPFIEDGVHAQNLIRSY 128
Query: 429 RLACKEAVKYIQDNLTVTVE 488
R A A+ +++ L V++E
Sbjct: 129 RTASTLAIAKVKE-LAVSIE 147
Score = 53.6 bits (123), Expect = 1e-07
Identities = 21/40 (52%), Positives = 33/40 (82%)
Frame = +1
Query: 136 AAAAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILK 255
A A+ ++V+++LGP G+DK++ DD G VT++NDGATI+K
Sbjct: 31 ACTAVGDVVRTTLGPRGMDKLIHDDKGSVTISNDGATIMK 70
Score = 37.9 bits (84), Expect = 0.006
Identities = 17/32 (53%), Positives = 23/32 (71%)
Frame = +2
Query: 518 AKTTMSSKLIGADADFFSEMVVDAAQGNQNNE 613
A TT+SSKLIG + +FF+ MVVDA N++
Sbjct: 162 AATTLSSKLIGGEKEFFATMVVDAVMAIGNDD 193
>At3g03960.1 68416.m00415 chaperonin, putative similar to
SWISS-PROT:P42932- T-complex protein 1, theta subunit
(TCP-1-theta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 549
Score = 78.6 bits (185), Expect = 4e-15
Identities = 35/82 (42%), Positives = 55/82 (67%)
Frame = +3
Query: 249 IKMLEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 428
+ LE++HPAAK+LV A+ Q EE+GDG + A ELL+NA+EL++ +HP+ IISGY
Sbjct: 73 VNELEIQHPAAKLLVLAAKAQQEEIGDGANLTISFAGELLQNAEELIRMGLHPSEIISGY 132
Query: 429 RLACKEAVKYIQDNLTVTVESL 494
A +AV+ ++ + E++
Sbjct: 133 TKAVSKAVEILEQLVETGSETM 154
Score = 39.1 bits (87), Expect = 0.003
Identities = 16/39 (41%), Positives = 28/39 (71%)
Frame = +1
Query: 136 AAAAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATIL 252
A ++ I ++SLGP G++KM+++ + + VTND ATI+
Sbjct: 35 ACKELSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIV 73
>At5g26360.1 68418.m03151 chaperonin, putative similar to
SWISS-PROT:P50143- T-complex protein 1, gamma subunit
(TCP-1-gamma) [Xenopus laevis]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 555
Score = 73.7 bits (173), Expect = 1e-13
Identities = 32/80 (40%), Positives = 56/80 (70%)
Frame = +3
Query: 249 IKMLEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 428
++ L+V HPAAK ++EL++ QDEEVGDGTTSV+++A E+L A+ ++ HPT I Y
Sbjct: 65 LRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEAFLEKNYHPTVICRAY 124
Query: 429 RLACKEAVKYIQDNLTVTVE 488
A ++++ + D + ++++
Sbjct: 125 IKALEDSIA-VLDKIAMSID 143
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/40 (47%), Positives = 30/40 (75%)
Frame = +1
Query: 136 AAAAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILK 255
A+ A+A+I++++LGP + KML+D G + VTNDG IL+
Sbjct: 27 ASKAVADIIRTTLGPRSMLKMLLDAGGGIVVTNDGNAILR 66
>At3g18190.1 68416.m02314 chaperonin, putative similar to
SWISS-PROT:P50991- T-complex protein 1, delta subunit
(TCP-1-delta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 536
Score = 72.1 bits (169), Expect = 3e-13
Identities = 50/141 (35%), Positives = 70/141 (49%)
Frame = +3
Query: 249 IKMLEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 428
+ +EV PAAK+LVEL++ QD GDGTT+VV+IA LLK L+ IHPT I
Sbjct: 74 LNKMEVLQPAAKMLVELSKSQDSAAGDGTTTVVVIAGALLKECQSLLTNGIHPTVISDSL 133
Query: 429 RLACKEAVKYIQDNLTVTVESLGRPSLSTQPKQPCHLN*LELMQISSRRWL*MLHRAIKT 608
AC +A+ I + V VE R SL LN + Q S+ + +
Sbjct: 134 HKACGKAID-ILTAMAVPVELTDRDSLVKSAS--TSLNSKVVSQYSTLLAPLAVDAVLSV 190
Query: 609 MNPRGNTIYPIQAINILKAPG 671
++P I ++ I I+K G
Sbjct: 191 IDPEKPEIVDLRDIKIVKKLG 211
Score = 49.6 bits (113), Expect = 2e-06
Identities = 24/49 (48%), Positives = 35/49 (71%)
Frame = +1
Query: 136 AAAAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILKCWKWSILLP 282
+A A+++ V++SLGP G+DKM+ G+V +TNDGATIL K +L P
Sbjct: 36 SARAVSDAVRTSLGPKGMDKMISTANGEVIITNDGATILN--KMEVLQP 82
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 68.5 bits (160), Expect = 4e-12
Identities = 29/72 (40%), Positives = 51/72 (70%)
Frame = +3
Query: 249 IKMLEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 428
++ ++V++ AK++VEL++ QD E+GDGTT VV++A LL+ A+ + IHP I GY
Sbjct: 74 LEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGALLEQAERQLDRGIHPIRIAEGY 133
Query: 429 RLACKEAVKYIQ 464
+A + AV++++
Sbjct: 134 EMASRVAVEHLE 145
Score = 56.0 bits (129), Expect = 2e-08
Identities = 25/40 (62%), Positives = 32/40 (80%)
Frame = +1
Query: 136 AAAAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILK 255
A A+A I++SSLGP G+DKML GD+T+TNDGATIL+
Sbjct: 36 AGKAVARILRSSLGPKGMDKMLQGPDGDITITNDGATILE 75
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 67.3 bits (157), Expect = 9e-12
Identities = 29/69 (42%), Positives = 49/69 (71%)
Frame = +3
Query: 258 LEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLA 437
++V++ AK++VEL++ QD E+GDGTT VV++A LL+ A+ + IHP I GY +A
Sbjct: 1 MDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGALLEQAERQLDRGIHPIRIAEGYEMA 60
Query: 438 CKEAVKYIQ 464
+ AV++++
Sbjct: 61 SRVAVEHLE 69
>At5g16070.1 68418.m01878 chaperonin, putative similar to
SWISS-PROT:P80317 T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 56.8 bits (131), Expect = 1e-08
Identities = 24/79 (30%), Positives = 47/79 (59%)
Frame = +3
Query: 249 IKMLEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 428
+K +++++P A ++ A QD+ GDGTTS VI EL+K ++ + +HP ++ G+
Sbjct: 63 LKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGF 122
Query: 429 RLACKEAVKYIQDNLTVTV 485
+A + ++++ DN V
Sbjct: 123 EIAKRATLQFL-DNFKTPV 140
Score = 44.4 bits (100), Expect = 7e-05
Identities = 20/40 (50%), Positives = 28/40 (70%)
Frame = +1
Query: 136 AAAAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILK 255
AA + +++KS+LGP G KMLV GD+ +T DG T+LK
Sbjct: 25 AAKGLQDVLKSNLGPKGTIKMLVGGSGDIKLTKDGNTLLK 64
>At3g02530.1 68416.m00241 chaperonin, putative similar to
SWISS-PROT:P80317- T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 56.0 bits (129), Expect = 2e-08
Identities = 23/79 (29%), Positives = 46/79 (58%)
Frame = +3
Query: 249 IKMLEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 428
+K +++++P A ++ A QD+ GDGTTS VI EL+K ++ + +HP ++ G+
Sbjct: 63 LKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGF 122
Query: 429 RLACKEAVKYIQDNLTVTV 485
+A + ++++ T V
Sbjct: 123 EIAKRATLQFLDTFKTPVV 141
Score = 44.4 bits (100), Expect = 7e-05
Identities = 20/40 (50%), Positives = 28/40 (70%)
Frame = +1
Query: 136 AAAAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILK 255
AA + +++KS+LGP G KMLV GD+ +T DG T+LK
Sbjct: 25 AAKGLQDVLKSNLGPKGTIKMLVGGSGDIKLTKDGNTLLK 64
>At5g18820.1 68418.m02236 chaperonin, putative similar to
SWISS-PROT:P08926- RuBisCO subunit binding-protein alpha
subunit, chloroplast precursor (60 kDa chaperonin alpha
subunit, CPN-60 alpha)[Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 575
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/67 (29%), Positives = 37/67 (55%)
Frame = +3
Query: 264 VEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACK 443
+E+ A ++ E+A +E GDGTT+ +I+A E++K + + S+ +G K
Sbjct: 97 IENAGATLIQEVAIKMNESAGDGTTTAIILAREMIKAGSLAIAFGANAVSVKNGMNKTVK 156
Query: 444 EAVKYIQ 464
E V+ +Q
Sbjct: 157 ELVRVLQ 163
>At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha
subunit, chloroplast / 60 kDa chaperonin alpha subunit /
CPN-60 alpha identical to SWISS-PROT:P21238- RuBisCO
subunit binding-protein alpha subunit, chloroplast
precursor (60 kDa chaperonin alpha subunit, CPN-60
alpha) [Arabidopsis thaliana]
Length = 586
Score = 35.9 bits (79), Expect = 0.026
Identities = 18/67 (26%), Positives = 37/67 (55%)
Frame = +3
Query: 264 VEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACK 443
+E+ A ++ E+A ++ GDGTT+ I+A E++K+ V + +P S+ G +
Sbjct: 110 MENAGAALIREVASKTNDSAGDGTTTASILAREIIKHGLLSVTSGANPVSLKRGIDKTVQ 169
Query: 444 EAVKYIQ 464
++ +Q
Sbjct: 170 GLIEELQ 176
>At5g56500.1 68418.m07051 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 597
Score = 34.3 bits (75), Expect = 0.079
Identities = 19/63 (30%), Positives = 32/63 (50%)
Frame = +3
Query: 264 VEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACK 443
VE+ AK++ + A ++ GDGTT+ V++A L+ ++V +P I G K
Sbjct: 117 VENIGAKLVRQAASKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTTK 176
Query: 444 EAV 452
V
Sbjct: 177 ALV 179
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +1
Query: 148 IANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILK 255
+A++V +LGP G + +L G + NDG T+ +
Sbjct: 74 LADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAR 109
>At3g13470.1 68416.m01695 chaperonin, putative similar
SWISS-PROT:P21240- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Arabidopsis thaliana]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 596
Score = 33.1 bits (72), Expect = 0.18
Identities = 18/67 (26%), Positives = 33/67 (49%)
Frame = +3
Query: 264 VEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACK 443
VE+ AK++ + A ++ GDGTT+ V++A + ++V +P I G K
Sbjct: 117 VENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAK 176
Query: 444 EAVKYIQ 464
V ++
Sbjct: 177 ALVNELK 183
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +1
Query: 148 IANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILK 255
+A++V +LGP G + +L G + NDG T+ +
Sbjct: 74 LADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAR 109
>At1g55490.2 68414.m06348 RuBisCO subunit binding-protein beta
subunit, chloroplast / 60 kDa chaperonin beta subunit /
CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO
subunit binding-protein beta subunit, chloroplast
precursor (60 kDa chaperonin beta subunit, CPN-60 beta)
[Arabidopsis thaliana]
Length = 600
Score = 32.7 bits (71), Expect = 0.24
Identities = 18/63 (28%), Positives = 31/63 (49%)
Frame = +3
Query: 264 VEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACK 443
VE+ AK++ + A ++ GDGTT+ V++A + ++V +P I G K
Sbjct: 121 VENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAK 180
Query: 444 EAV 452
V
Sbjct: 181 ALV 183
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +1
Query: 148 IANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILK 255
+A++V +LGP G + +L G + NDG T+ +
Sbjct: 78 LADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAR 113
>At1g55490.1 68414.m06347 RuBisCO subunit binding-protein beta
subunit, chloroplast / 60 kDa chaperonin beta subunit /
CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO
subunit binding-protein beta subunit, chloroplast
precursor (60 kDa chaperonin beta subunit, CPN-60 beta)
[Arabidopsis thaliana]
Length = 600
Score = 32.7 bits (71), Expect = 0.24
Identities = 18/63 (28%), Positives = 31/63 (49%)
Frame = +3
Query: 264 VEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACK 443
VE+ AK++ + A ++ GDGTT+ V++A + ++V +P I G K
Sbjct: 121 VENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAK 180
Query: 444 EAV 452
V
Sbjct: 181 ALV 183
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +1
Query: 148 IANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILK 255
+A++V +LGP G + +L G + NDG T+ +
Sbjct: 78 LADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAR 113
>At1g26230.1 68414.m03200 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 611
Score = 31.1 bits (67), Expect = 0.73
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +1
Query: 139 AAAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILK 255
A +A ++ +LGP G + +L + G + NDG T+LK
Sbjct: 59 ADMVAKLLGVTLGPKGRNVVLQNKYGPPRIVNDGETVLK 97
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Frame = +3
Query: 249 IKMLEVEHPAAKVLVELAQLQ----DEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSI 416
+K +E+E P V V+L + ++ GDG+T+ +I+A L+ +++ +P +
Sbjct: 96 LKEIELEDPLENVGVKLVRQAGAKTNDLAGDGSTTSIILAHGLITEGIKVISAGTNPIQV 155
Query: 417 ISGYRLACKEAV 452
G K V
Sbjct: 156 ARGIEKTTKALV 167
>At3g13860.1 68416.m01751 chaperonin, putative similar to
SWISS-PROT:P29197- chaperonin CPN60, mitochondrial
precursor (HSP60) [Arabidopsis thaliana] ; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 572
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 148 IANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILK 255
+A VK ++GP G + ++ G +T DG T+ K
Sbjct: 53 VAEAVKVTMGPKGRNVIIESSYGGPKITKDGVTVAK 88
>At3g23990.1 68416.m03013 chaperonin (CPN60) (HSP60) identical to
SWISS-PROT:P29197- chaperonin CPN60, mitochondrial
precursor (HSP60) [Arabidopsis thaliana]
Length = 577
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 148 IANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILK 255
+A+ VK ++GP G + ++ G VT DG T+ K
Sbjct: 53 LADAVKVTMGPKGRNVVIEQSWGAPKVTKDGVTVAK 88
>At2g33210.1 68415.m04069 chaperonin, putative similar to
SWISS-PROT:Q05046- chaperonin CPN60-2, mitochondrial
precursor (HSP60-2) [Cucurbita maxima]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 585
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 148 IANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILK 255
+A+ VK ++GP G + ++ G VT DG T+ K
Sbjct: 54 LADAVKVTMGPKGRNVIIEQSWGAPKVTKDGVTVAK 89
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/67 (19%), Positives = 31/67 (46%)
Frame = +3
Query: 264 VEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACK 443
+++ A ++ ++A ++ GDGTT ++ + + V ++ + G +LA
Sbjct: 97 IKNVGASLVKQVANATNDVAGDGTTCATVLTRAIFTEGCKSVAAGMNAMDLRRGIKLAVD 156
Query: 444 EAVKYIQ 464
V +Q
Sbjct: 157 TVVTNLQ 163
>At1g79060.1 68414.m09218 expressed protein
Length = 396
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/38 (31%), Positives = 25/38 (65%)
Frame = +2
Query: 497 QAVSINTAKTTMSSKLIGADADFFSEMVVDAAQGNQNN 610
++VSI++++ ++SS G D + + +DA + NQN+
Sbjct: 190 ESVSISSSRMSLSSSSSGHDHEDLPRLSLDAERPNQNH 227
>At3g16200.1 68416.m02045 expressed protein
Length = 452
Score = 27.5 bits (58), Expect = 9.0
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = -2
Query: 643 WIGYIVFPLGFIVLIALCSIYNHLREEICISSN*FR*HGCFGCVDRDGLPSD 488
W ++ L F+VL+ L S+ H +CIS F G DGL SD
Sbjct: 68 WWPCLILALLFLVLLFLISVAFHSHSFVCISR--FDPAARIGFFGLDGLESD 117
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,039,071
Number of Sequences: 28952
Number of extensions: 300539
Number of successful extensions: 738
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -