Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30939.Seq
         (504 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1393.03 |rps1501|rps15-1|40S ribosomal protein S15|Schizosac...   104   9e-24
SPAC1071.07c |rps1502|rps15-2, rps15|40S ribosomal protein S15|S...   104   9e-24
SPAC1751.02c |rsm19||mitochondrial ribosomal protein subunit S19...    33   0.024
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p...    25   4.9  

>SPCC1393.03 |rps1501|rps15-1|40S ribosomal protein
           S15|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 153

 Score =  104 bits (249), Expect = 9e-24
 Identities = 46/56 (82%), Positives = 49/56 (87%)
 Frame = +1

Query: 262 VGSIVGIYNGKTFNQVEIKXEMXGXYLGEFSVTYKXVKHGRPGIGVTHSSRFIPLK 429
           VGS+VGIYNGK FNQVEI+ EM G YLGEFS+TYK  KHGRPGIG THSSRFIPLK
Sbjct: 98  VGSVVGIYNGKLFNQVEIRPEMIGHYLGEFSITYKPTKHGRPGIGATHSSRFIPLK 153



 Score = 56.8 bits (131), Expect = 2e-09
 Identities = 27/50 (54%), Positives = 35/50 (70%)
 Frame = +3

Query: 48  RGVDLDQLLDMXNEQLMELMHARARXRFARGLKRKXMALVKXLRRAKKEA 197
           RGV+L+QLLD+  EQL++L HARAR R  RGL       ++ LR+AK EA
Sbjct: 26  RGVELEQLLDLSAEQLVDLFHARARRRMLRGLGPNASRFIRKLRKAKTEA 75


>SPAC1071.07c |rps1502|rps15-2, rps15|40S ribosomal protein
           S15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 154

 Score =  104 bits (249), Expect = 9e-24
 Identities = 46/56 (82%), Positives = 49/56 (87%)
 Frame = +1

Query: 262 VGSIVGIYNGKTFNQVEIKXEMXGXYLGEFSVTYKXVKHGRPGIGVTHSSRFIPLK 429
           VGS+VGIYNGK FNQVEI+ EM G YLGEFS+TYK  KHGRPGIG THSSRFIPLK
Sbjct: 99  VGSVVGIYNGKLFNQVEIRPEMIGHYLGEFSITYKPTKHGRPGIGATHSSRFIPLK 154



 Score = 57.2 bits (132), Expect = 1e-09
 Identities = 27/50 (54%), Positives = 35/50 (70%)
 Frame = +3

Query: 48  RGVDLDQLLDMXNEQLMELMHARARXRFARGLKRKXMALVKXLRRAKKEA 197
           RGV+L+QLLD+  EQL++L HARAR R  RGL       ++ LR+AK EA
Sbjct: 27  RGVELEQLLDLSAEQLVDLFHARARRRMLRGLGPNASRFIRKLRKAKSEA 76


>SPAC1751.02c |rsm19||mitochondrial ribosomal protein subunit
           S19|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 33.1 bits (72), Expect = 0.024
 Identities = 15/35 (42%), Positives = 23/35 (65%)
 Frame = +1

Query: 262 VGSIVGIYNGKTFNQVEIKXEMXGXYLGEFSVTYK 366
           VG+   ++NGK++  V+I  +M G  LGEF+ T K
Sbjct: 64  VGAQFMVHNGKSYANVKITEDMIGHKLGEFAPTRK 98


>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +3

Query: 18  KSVFSGSSLTRGVDLDQLLDMXNEQLMELMH 110
           + + S  +   G+D+D L D+ NE+   ++H
Sbjct: 15  EKIISSYNDANGLDIDDLWDIYNEKTRRMIH 45


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,356,898
Number of Sequences: 5004
Number of extensions: 17366
Number of successful extensions: 39
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)