Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30939.Seq
         (504 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0314 - 33077621-33077869,33078218-33078280,33079392-330794...   105   3e-23
07_01_0604 - 4491884-4491993,4493030-4493225,4494269-4494326,449...    73   1e-13
01_06_0536 + 30068881-30070383                                         28   4.9  
04_03_0501 + 16593710-16593886,16595255-16595311,16595748-165974...    27   6.5  
05_01_0213 - 1606383-1606816,1607695-1608355                           27   8.6  

>03_06_0314 -
           33077621-33077869,33078218-33078280,33079392-33079449,
           33079534-33079688,33079797-33080106,33080634-33080890,
           33081280-33081359,33083888-33083948
          Length = 410

 Score =  105 bits (251), Expect = 3e-23
 Identities = 46/56 (82%), Positives = 50/56 (89%)
 Frame = +1

Query: 262 VGSIVGIYNGKTFNQVEIKXEMXGXYLGEFSVTYKXVKHGRPGIGVTHSSRFIPLK 429
           +GSIVG+YNGKTFNQVEIK EM G YL EFS++YK VKHGRPGIG THSSRFIPLK
Sbjct: 355 IGSIVGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 410



 Score = 66.9 bits (156), Expect = 9e-12
 Identities = 35/58 (60%), Positives = 41/58 (70%)
 Frame = +3

Query: 12  PRKSVFSGSSLTRGVDLDQLLDMXNEQLMELMHARARXRFARGLKRKXMALVKXLRRA 185
           P+K  F   S  RGVDLD LLDM  + L++L  ARAR RF RGLKRK MAL+K LR+A
Sbjct: 251 PKKRTFRKYSY-RGVDLDALLDMSTDDLVQLFPARARRRFQRGLKRKPMALIKKLRKA 307


>07_01_0604 -
           4491884-4491993,4493030-4493225,4494269-4494326,
           4494459-4494613,4495092-4495115,4495377-4495489,
           4499943-4500129
          Length = 280

 Score = 73.3 bits (172), Expect = 1e-13
 Identities = 38/62 (61%), Positives = 45/62 (72%)
 Frame = +3

Query: 12  PRKSVFSGSSLTRGVDLDQLLDMXNEQLMELMHARARXRFARGLKRKXMALVKXLRRAKK 191
           P+K  F   S  RGVDLD LLDM  + L++L  ARAR RF RGLKRK MAL+K LR+AKK
Sbjct: 123 PKKRTFRKYSY-RGVDLDALLDMSTDDLVQLFPARARRRFQRGLKRKPMALIKKLRKAKK 181

Query: 192 EA 197
           +A
Sbjct: 182 DA 183



 Score = 70.5 bits (165), Expect = 7e-13
 Identities = 30/39 (76%), Positives = 34/39 (87%)
 Frame = +1

Query: 262 VGSIVGIYNGKTFNQVEIKXEMXGXYLGEFSVTYKXVKH 378
           +GSIVG+YNGKTFNQVEIK EM G YL EFS++YK VKH
Sbjct: 206 IGSIVGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKH 244


>01_06_0536 + 30068881-30070383
          Length = 500

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -1

Query: 504 YTSYFIVXSCKFXVTLSLEVVLDALLERNEP 412
           Y SY ++ +C F   +  E +++ LLE N P
Sbjct: 163 YCSYLLLENCMFGRQIEQERIINFLLEPNHP 193


>04_03_0501 +
           16593710-16593886,16595255-16595311,16595748-16597469,
           16599045-16599326,16599521-16599637,16599655-16600365
          Length = 1021

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +3

Query: 72  LDMXNEQLMELMHARARXRFARGLKRKXMALVKXLRRAKKEA 197
           +DM  ++   L  ARAR    RG K K  A  K L  A++ A
Sbjct: 160 VDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARRLA 201


>05_01_0213 - 1606383-1606816,1607695-1608355
          Length = 364

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +2

Query: 386 PVSVLHTAQGSFRSSRASKTTSRLSVT 466
           PVSVLH    S  SS +S TT+  + T
Sbjct: 176 PVSVLHAQHSSSSSSSSSTTTTTTTTT 202


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,035,237
Number of Sequences: 37544
Number of extensions: 119215
Number of successful extensions: 154
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)