Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30939.Seq
         (504 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29066| Best HMM Match : No HMM Matches (HMM E-Value=.)             106   1e-23
SB_20870| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_56863| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                27   8.8  

>SB_29066| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 212

 Score =  106 bits (254), Expect = 1e-23
 Identities = 46/56 (82%), Positives = 50/56 (89%)
 Frame = +1

Query: 262 VGSIVGIYNGKTFNQVEIKXEMXGXYLGEFSVTYKXVKHGRPGIGVTHSSRFIPLK 429
           +GS+VG+YNGKTF QVEIK EM G YLGEFS+TYK VKHGRPGIG THSSRFIPLK
Sbjct: 94  IGSVVGVYNGKTFTQVEIKPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK 149



 Score = 75.4 bits (177), Expect = 3e-14
 Identities = 37/53 (69%), Positives = 43/53 (81%)
 Frame = +3

Query: 48  RGVDLDQLLDMXNEQLMELMHARARXRFARGLKRKXMALVKXLRRAKKEALRM 206
           RGVDLDQLLD+ +EQLMEL+  R R RF RGLKRK +AL+K LR+AKKEA  M
Sbjct: 22  RGVDLDQLLDLSHEQLMELVCCRQRRRFTRGLKRKPLALMKRLRKAKKEAAPM 74



 Score = 30.3 bits (65), Expect = 0.94
 Identities = 22/77 (28%), Positives = 30/77 (38%)
 Frame = +2

Query: 14  KKKRIFRKFTYPGS*SRSAP*YAQ*ATHGINACXXAXAVRSWS*T*TNGIGXXAASRQER 193
           K+KR FRKFTY G         +      +  C                +       ++ 
Sbjct: 11  KRKRTFRKFTYRGVDLDQLLDLSHEQLMELVCCRQRRRFTRGLKRKPLALMKRLRKAKKE 70

Query: 194 GSPNEKPEIVKTHLXXM 244
            +P EKPE+VKTHL  M
Sbjct: 71  AAPMEKPEVVKTHLRNM 87


>SB_20870| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2032

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
 Frame = +3

Query: 27   FSGSSLTRGVDLDQLLDMXNEQLMEL--MHARARXRFARGLKRKXMALVKXLRRAKKEAL 200
            F  SS+  G    Q L      L +   + A  R RFAR + +    L   L+   K  L
Sbjct: 1066 FENSSVLSGRFWMQCLTALQSSLKQRDQLSADGRERFARQVTKAAQELRTKLQERDKGLL 1125

Query: 201  RMRSQRS*R 227
            R RSQ+S R
Sbjct: 1126 RARSQQSAR 1134


>SB_56863| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 4248

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +1

Query: 298  FNQVEIKXEMXGXYLGEFSVTYKXVKHGRPGIGVT 402
            +N V +K E+ G Y+   S+ +    +  PG+  T
Sbjct: 1882 YNDVAMKLELYGSYVCNSSILFSNSTYAAPGVSYT 1916


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,368,493
Number of Sequences: 59808
Number of extensions: 140021
Number of successful extensions: 289
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 289
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1099461690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)