Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30939.Seq
         (504 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g09510.1 68418.m01100 40S ribosomal protein S15 (RPS15D) ribo...   104   4e-23
At1g04270.1 68414.m00418 40S ribosomal protein S15 (RPS15A) Stro...   104   4e-23
At5g43640.1 68418.m05334 40S ribosomal protein S15 (RPS15E)           101   3e-22
At5g09500.1 68418.m01099 40S ribosomal protein S15 (RPS15C) ribo...   101   4e-22
At5g09490.1 68418.m01098 40S ribosomal protein S15 (RPS15B) ribo...   100   5e-22
At5g63070.1 68418.m07914 40S ribosomal protein S15, putative           66   2e-11
At1g33850.1 68414.m04194 40S ribosomal protein S15, putative sim...    59   1e-09
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria...    35   0.036
At1g27070.1 68414.m03300 5'-AMP-activated protein kinase-related...    28   3.1  
At1g09770.1 68414.m01096 myb family transcription factor contain...    27   5.4  

>At5g09510.1 68418.m01100 40S ribosomal protein S15 (RPS15D)
           ribosomal protein S15 - Arabidopsis thaliana,
           EMBL:Z23161
          Length = 152

 Score =  104 bits (249), Expect = 4e-23
 Identities = 44/56 (78%), Positives = 50/56 (89%)
 Frame = +1

Query: 262 VGSIVGIYNGKTFNQVEIKXEMXGXYLGEFSVTYKXVKHGRPGIGVTHSSRFIPLK 429
           +GSI+G+YNGKTFNQVEIK EM G YL EFS++YK VKHGRPG+G THSSRFIPLK
Sbjct: 97  IGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGVGATHSSRFIPLK 152



 Score = 66.9 bits (156), Expect = 7e-12
 Identities = 33/62 (53%), Positives = 44/62 (70%)
 Frame = +3

Query: 12  PRKSVFSGSSLTRGVDLDQLLDMXNEQLMELMHARARXRFARGLKRKXMALVKXLRRAKK 191
           P+K  F   +  +GVDLD LLDM  + L++L  +R R RF+RGL RK MAL+K LR+AK+
Sbjct: 14  PKKRTFKKFAF-KGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTRKPMALIKKLRKAKR 72

Query: 192 EA 197
           EA
Sbjct: 73  EA 74


>At1g04270.1 68414.m00418 40S ribosomal protein S15 (RPS15A) Strong
           similarity to Oryza 40S ribosomal protein S15. ESTs
           gb|R29788,gb|ATTS0365 come from this gene
          Length = 152

 Score =  104 bits (249), Expect = 4e-23
 Identities = 44/56 (78%), Positives = 50/56 (89%)
 Frame = +1

Query: 262 VGSIVGIYNGKTFNQVEIKXEMXGXYLGEFSVTYKXVKHGRPGIGVTHSSRFIPLK 429
           +GSI+G+YNGKTFNQVEIK EM G YL EFS++YK VKHGRPG+G THSSRFIPLK
Sbjct: 97  IGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGVGATHSSRFIPLK 152



 Score = 66.9 bits (156), Expect = 7e-12
 Identities = 33/62 (53%), Positives = 44/62 (70%)
 Frame = +3

Query: 12  PRKSVFSGSSLTRGVDLDQLLDMXNEQLMELMHARARXRFARGLKRKXMALVKXLRRAKK 191
           P+K  F   +  +GVDLD LLDM  + L++L  +R R RF+RGL RK MAL+K LR+AK+
Sbjct: 14  PKKRTFKKFAF-KGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTRKPMALIKKLRKAKR 72

Query: 192 EA 197
           EA
Sbjct: 73  EA 74


>At5g43640.1 68418.m05334 40S ribosomal protein S15 (RPS15E) 
          Length = 149

 Score =  101 bits (242), Expect = 3e-22
 Identities = 43/56 (76%), Positives = 50/56 (89%)
 Frame = +1

Query: 262 VGSIVGIYNGKTFNQVEIKXEMXGXYLGEFSVTYKXVKHGRPGIGVTHSSRFIPLK 429
           +GSI+G+YNGKTFNQVEIK EM G YL EFS++YK VKHGRPG+G T+SSRFIPLK
Sbjct: 94  IGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGVGATNSSRFIPLK 149



 Score = 62.5 bits (145), Expect = 2e-10
 Identities = 34/61 (55%), Positives = 41/61 (67%)
 Frame = +3

Query: 15  RKSVFSGSSLTRGVDLDQLLDMXNEQLMELMHARARXRFARGLKRKXMALVKXLRRAKKE 194
           +K  F   S  RGVDLD LLDM  E L++   +R R RF+RGL RK MAL+K LR+AK E
Sbjct: 12  KKRTFKKFSF-RGVDLDALLDMSIEDLVKHFSSRIRRRFSRGLTRKPMALIKKLRKAKME 70

Query: 195 A 197
           A
Sbjct: 71  A 71


>At5g09500.1 68418.m01099 40S ribosomal protein S15 (RPS15C)
           ribosomal protein S15 - Arabidopsis thaliana,
           EMBL:Z23161
          Length = 150

 Score =  101 bits (241), Expect = 4e-22
 Identities = 42/56 (75%), Positives = 50/56 (89%)
 Frame = +1

Query: 262 VGSIVGIYNGKTFNQVEIKXEMXGXYLGEFSVTYKXVKHGRPGIGVTHSSRFIPLK 429
           +GS++G+YNGKTFNQVEIK EM G YL EFS++YK VKHGRPG+G T+SSRFIPLK
Sbjct: 95  IGSVIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGVGATNSSRFIPLK 150



 Score = 64.1 bits (149), Expect = 5e-11
 Identities = 34/61 (55%), Positives = 42/61 (68%)
 Frame = +3

Query: 15  RKSVFSGSSLTRGVDLDQLLDMXNEQLMELMHARARXRFARGLKRKXMALVKXLRRAKKE 194
           +K  F   S  RGVDLD LLDM  + L++L  +R R RF+RGL RK MAL+K LR+AK E
Sbjct: 13  KKRTFKKFSF-RGVDLDALLDMSTDDLVKLFPSRIRRRFSRGLTRKPMALIKKLRKAKIE 71

Query: 195 A 197
           A
Sbjct: 72  A 72


>At5g09490.1 68418.m01098 40S ribosomal protein S15 (RPS15B)
           ribosomal protein S15 - Arabidopsis thaliana,
           EMBL:Z23161
          Length = 152

 Score =  100 bits (240), Expect = 5e-22
 Identities = 42/56 (75%), Positives = 49/56 (87%)
 Frame = +1

Query: 262 VGSIVGIYNGKTFNQVEIKXEMXGXYLGEFSVTYKXVKHGRPGIGVTHSSRFIPLK 429
           +GSI+G+YNGKTFNQ+EIK EM G YL EFS+TYK V+HG+PG G THSSRFIPLK
Sbjct: 97  IGSIIGVYNGKTFNQIEIKPEMIGHYLAEFSITYKPVRHGKPGHGATHSSRFIPLK 152



 Score = 61.3 bits (142), Expect = 4e-10
 Identities = 32/61 (52%), Positives = 41/61 (67%)
 Frame = +3

Query: 15  RKSVFSGSSLTRGVDLDQLLDMXNEQLMELMHARARXRFARGLKRKXMALVKXLRRAKKE 194
           +K  F   S  +GVDLD LLDM  + L+EL  +R R R +RGL RK MAL+K LR+AK +
Sbjct: 15  KKRTFKKFSF-KGVDLDALLDMPTDDLVELFPSRIRRRMSRGLTRKPMALIKKLRKAKLD 73

Query: 195 A 197
           A
Sbjct: 74  A 74


>At5g63070.1 68418.m07914 40S ribosomal protein S15, putative
          Length = 160

 Score = 65.7 bits (153), Expect = 2e-11
 Identities = 32/60 (53%), Positives = 41/60 (68%), Gaps = 4/60 (6%)
 Frame = +1

Query: 262 VGSIVGIYNGKTFNQVEIKXEMXGXYLGEFSVTYKXVKHGRPGI----GVTHSSRFIPLK 429
           +GS+VG++NGK FN++ IK EM G YL EFS+T K V H RP I        S+RFIPL+
Sbjct: 101 IGSVVGVHNGKKFNEIVIKPEMIGHYLAEFSMTCKKVNHHRPRICGCCCFRRSTRFIPLR 160



 Score = 58.4 bits (135), Expect = 3e-09
 Identities = 31/61 (50%), Positives = 40/61 (65%)
 Frame = +3

Query: 15  RKSVFSGSSLTRGVDLDQLLDMXNEQLMELMHARARXRFARGLKRKXMALVKXLRRAKKE 194
           +K  F   S  RG ++D LL M N  L +L +AR R RF RGLK++ + L+K LRRAKKE
Sbjct: 17  KKRTFKKFSF-RGFNVDALLKMSNVDLAKLFNARVRRRFYRGLKKQPLILIKKLRRAKKE 75

Query: 195 A 197
           A
Sbjct: 76  A 76


>At1g33850.1 68414.m04194 40S ribosomal protein S15, putative
           similar to SP|Q08112 40S ribosomal protein S15
           {Arabidopsis thaliana}
          Length = 70

 Score = 59.3 bits (137), Expect = 1e-09
 Identities = 31/59 (52%), Positives = 39/59 (66%)
 Frame = +3

Query: 15  RKSVFSGSSLTRGVDLDQLLDMXNEQLMELMHARARXRFARGLKRKXMALVKXLRRAKK 191
           +K +F   S  RGVDLD LLDM  E L++   +R R RF+RG  RK MAL+K LR+A K
Sbjct: 12  KKRIFKKFSF-RGVDLDALLDMSTEDLVKHFSSRIRRRFSRGFTRKPMALIKKLRKAVK 69


>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
           (RPS19)
          Length = 212

 Score = 34.7 bits (76), Expect = 0.036
 Identities = 18/41 (43%), Positives = 22/41 (53%)
 Frame = +1

Query: 262 VGSIVGIYNGKTFNQVEIKXEMXGXYLGEFSVTYKXVKHGR 384
           V S V IYNGKT  + +I     G   GEF+ T K  KH +
Sbjct: 170 VDSAVRIYNGKTHVRCKITEGKVGHKFGEFAFTRKVKKHAK 210


>At1g27070.1 68414.m03300 5'-AMP-activated protein kinase-related
           contains weak similarity to Swiss-Prot:Q9QZH4
           5'-AMP-activated protein kinase, beta-2 subunit (AMPK
           beta-2 chain) [Rattus norvegicus]
          Length = 532

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +3

Query: 3   RNPPRKSVFSGSSLTRGVDLDQLLDMXNEQLMELMHARARXRFAR 137
           R+PP K V S  S T   +L+ L D    +  E++HA+ + R  R
Sbjct: 370 RSPPDKVVTSKDSETTAGNLENLSDDWEYKENEIIHAQNKLRSTR 414


>At1g09770.1 68414.m01096 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 844

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +3

Query: 72  LDMXNEQLMELMHARARXRFARGLKRKXMALVKXLRRAKKEA 197
           +DM  ++   L  ARAR    RG K K  A  K L  A++ A
Sbjct: 141 VDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARRLA 182


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,204,676
Number of Sequences: 28952
Number of extensions: 93701
Number of successful extensions: 181
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 898188928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)