Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30934.Seq
(698 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po... 62 6e-11
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ... 48 1e-06
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po... 44 3e-05
SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyc... 40 5e-04
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ... 36 0.004
SPBC12D12.07c |trx2||mitochondrial thioredoxin Trx2|Schizosaccha... 36 0.004
SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac... 36 0.006
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ... 30 0.37
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c... 28 1.5
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9... 27 2.0
SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces pomb... 27 3.4
SPBC4B4.11 |||conserved fungal protein|Schizosaccharomyces pombe... 27 3.4
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 25 7.9
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb... 25 7.9
>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 492
Score = 62.5 bits (145), Expect = 6e-11
Identities = 32/84 (38%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Frame = +2
Query: 260 IKLAKVDATQEQDLAESYGVRGYPTLKFFRNGSPI-DYSGGRQADDIISWLKKKTGPPAV 436
I L +VD T+E DL Y +RGYPTL F+NG I YSG R+ D ++ +++K+ P V
Sbjct: 73 ISLVEVDCTEEGDLCSEYSIRGYPTLNVFKNGKQISQYSGPRKHDALVKYMRKQL-LPTV 131
Query: 437 EVTSAEQAKELID-ANTVIVFGFF 505
+ S + + ++ A+ + V FF
Sbjct: 132 KPISKDTLENFVEKADDLAVVAFF 155
Score = 55.2 bits (127), Expect = 9e-09
Identities = 22/41 (53%), Positives = 33/41 (80%), Gaps = 1/41 (2%)
Frame = +3
Query: 96 TEENVLVLSKANFETVITT-TEYILVEFYAPWCGHCKSLAP 215
++E+++VL NF+ ++ T+ +LVEFYAPWCGHCK+LAP
Sbjct: 353 SQEDLVVLVADNFDDIVMDETKDVLVEFYAPWCGHCKNLAP 393
Score = 48.8 bits (111), Expect = 7e-07
Identities = 17/33 (51%), Positives = 25/33 (75%)
Frame = +3
Query: 117 LSKANFETVITTTEYILVEFYAPWCGHCKSLAP 215
++K +IT + ++V+FYAPWCGHCK+LAP
Sbjct: 27 VNKEGLNELITADKVLMVKFYAPWCGHCKALAP 59
Score = 37.1 bits (82), Expect = 0.002
Identities = 19/55 (34%), Positives = 35/55 (63%), Gaps = 3/55 (5%)
Frame = +2
Query: 260 IKLAKVDATQEQDLAESYGVRGYPTLKFFRNG---SPIDYSGGRQADDIISWLKK 415
+ +AK+DAT E D++ S + G+PT+ FF+ +P+ Y G R +D+ +++ K
Sbjct: 408 VVVAKIDAT-ENDISVS--ISGFPTIMFFKANDKVNPVRYEGDRTLEDLSAFIDK 459
>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 359
Score = 48.0 bits (109), Expect = 1e-06
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Frame = +2
Query: 260 IKLAKVDATQEQDLAESYGVRGYPTLKFF-RNGS-PIDYSGGRQADDIISWLKKKTGPPA 433
+ + K+DA D+A+ Y + G+PTL +F +GS P+ YS R D + ++ +KTG
Sbjct: 74 VLIGKIDADTHSDVADKYHITGFPTLIWFPPDGSEPVQYSNARDVDSLTQFVSEKTGIKK 133
Query: 434 VEVTSAEQAKELIDAN 481
++ EL N
Sbjct: 134 RKIVLPSNVVELDSLN 149
Score = 46.4 bits (105), Expect = 4e-06
Identities = 20/38 (52%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Frame = +3
Query: 105 NVLVLSKANFETVITTTEY-ILVEFYAPWCGHCKSLAP 215
NV+ L NF+ V+ + +LVEFYA WCG+CK LAP
Sbjct: 141 NVVELDSLNFDKVVMDDKKDVLVEFYADWCGYCKRLAP 178
Score = 44.4 bits (100), Expect = 2e-05
Identities = 23/63 (36%), Positives = 33/63 (52%)
Frame = +3
Query: 27 IEMRVLIFTAIALLGLALGDEVPTEENVLVLSKANFETVITTTEYILVEFYAPWCGHCKS 206
+ + +L F AL L V +++ L T+ + + L+EFYA WCGHCKS
Sbjct: 1 MRLPLLSFVIFALFALVFASGVVELQSLNELEN----TIRASKKGALIEFYATWCGHCKS 56
Query: 207 LAP 215
LAP
Sbjct: 57 LAP 59
Score = 37.1 bits (82), Expect = 0.002
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Frame = +2
Query: 260 IKLAKVDATQEQDLAESYGVRGYPTLKFF---RNGSPIDYSGGRQADDIISWLKKKTG 424
+++ K++A D+ + V +PT+KFF P Y G R + +I ++ KK+G
Sbjct: 193 VEIVKINADVFADIGRLHEVASFPTIKFFPKDDKDKPELYEGDRSLESLIEYINKKSG 250
>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 363
Score = 43.6 bits (98), Expect = 3e-05
Identities = 20/58 (34%), Positives = 26/58 (44%)
Frame = +3
Query: 42 LIFTAIALLGLALGDEVPTEENVLVLSKANFETVITTTEYILVEFYAPWCGHCKSLAP 215
L +L+ G N + L+ NF + LV FYAPWCG+CK L P
Sbjct: 11 LFLACFSLVSGVFGYSPMFGSNTIELNSKNFRKFVKAKGPSLVVFYAPWCGYCKKLVP 68
Score = 30.3 bits (65), Expect = 0.28
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Frame = +2
Query: 257 PIKLAKVDATQEQDLAESYGVRGYPTLKFF---RNGSPI---DYSGGRQADDIISWLKKK 418
P+ DA Q + + Y V+G+PT+K GS + DY+G R + ++
Sbjct: 82 PVTAVDCDADQNRAVCSQYQVQGFPTIKLVYPSSKGSSLSSTDYNGDRSYKSLQKFVSDS 141
Query: 419 TGPPAVEVTSAE 454
P V++ ++E
Sbjct: 142 I-PSKVKILTSE 152
>SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 103
Score = 39.5 bits (88), Expect = 5e-04
Identities = 12/34 (35%), Positives = 24/34 (70%)
Frame = +3
Query: 114 VLSKANFETVITTTEYILVEFYAPWCGHCKSLAP 215
V + F++++ + ++V+F+A WCG CK++AP
Sbjct: 5 VSDSSEFKSIVCQDKLVVVDFFATWCGPCKAIAP 38
Score = 27.1 bits (57), Expect = 2.6
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 272 KVDATQEQDLAESYGVRGYPTLKFFRNGSPID 367
KVD Q ++A GV P+ ++NG I+
Sbjct: 54 KVDVDQLSEIAAEAGVHAMPSFFLYKNGEKIE 85
>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 36.3 bits (80), Expect = 0.004
Identities = 12/65 (18%), Positives = 36/65 (55%)
Frame = +2
Query: 260 IKLAKVDATQEQDLAESYGVRGYPTLKFFRNGSPIDYSGGRQADDIISWLKKKTGPPAVE 439
+K+A+V+ +E+++ + ++ +PT + F+ I Y+G + ++S+ + A++
Sbjct: 230 LKMAQVNCDEEKEMCNHFHIKKFPTFRVFQGFDSIQYNGPLKYQQLLSYSNQVASYQAIK 289
Query: 440 VTSAE 454
+ +
Sbjct: 290 IEEGD 294
Score = 28.3 bits (60), Expect = 1.1
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Frame = +2
Query: 299 LAESYGVRGYPTLKFFRNGSPIDYSG--GRQADD---IISWLKKKTGPPAVEVT 445
LA YG + P++ RNG PI Y R+ D I W+ + P E+T
Sbjct: 343 LANKYGAQSQPSIIAVRNGMPIVYQAITPREFRDYKRITEWINIVSSPFITELT 396
>SPBC12D12.07c |trx2||mitochondrial thioredoxin
Trx2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 121
Score = 36.3 bits (80), Expect = 0.004
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +3
Query: 114 VLSKANFETVITTTEYILVEFYAPWCGHCKSLAP 215
V S ++ T I+ + +V+FYA WCG CK L P
Sbjct: 22 VESFGDYNTRISADKVTVVDFYADWCGPCKYLKP 55
Score = 31.1 bits (67), Expect = 0.16
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +2
Query: 275 VDATQEQDLAESYGVRGYPTLKFFRNGSPIDYSGGRQADDIISWLKK 415
V+A + D+A+ GV PT+ FR G +D G + S L K
Sbjct: 72 VNADKFSDIAQKNGVYALPTMVLFRKGQELDRIVGADVKTLSSLLAK 118
>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
Txl1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 290
Score = 35.9 bits (79), Expect = 0.006
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Frame = +2
Query: 269 AKVDATQEQDLAESYGVRGYPTLKFFRNGSPIDYSGGR--QA--DDIISWLKKKTGPPAV 436
AKV+ +++ +A GV+ PT FF NG ID G QA + + K TG A+
Sbjct: 56 AKVNVDEQRQIASGLGVKAMPTFVFFENGKQIDMLTGANPQALKEKVALISSKATGTGAL 115
Query: 437 EVTSAEQAK 463
+S+ K
Sbjct: 116 ASSSSAPVK 124
Score = 33.9 bits (74), Expect = 0.022
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +3
Query: 114 VLSKANFETVITTTEYILVEFYAPWCGHCKSLAP 215
+ S ++ + I + Y+ V+ YA WCG CK+++P
Sbjct: 6 IRSYQHWISTIPKSGYLAVDCYADWCGPCKAISP 39
>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 726
Score = 29.9 bits (64), Expect = 0.37
Identities = 11/55 (20%), Positives = 29/55 (52%)
Frame = +2
Query: 251 RTPIKLAKVDATQEQDLAESYGVRGYPTLKFFRNGSPIDYSGGRQADDIISWLKK 415
R + +A ++ + + Y ++ +PT FF+ + ++Y G D++S+ ++
Sbjct: 328 RGKLNVAHINCAVSKRACKQYSIQYFPTFLFFKEEAFVEYVGLPNEGDLVSFAEE 382
Score = 25.8 bits (54), Expect = 6.0
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +3
Query: 168 VEFYAPWCGHCKSLAP 215
+++Y P CG CK L P
Sbjct: 47 IKYYLPSCGACKRLGP 62
>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 27.9 bits (59), Expect = 1.5
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +3
Query: 156 EYILVEFYAPWCGHCKSL 209
+ IL+ FYAPW CK +
Sbjct: 21 QIILLNFYAPWAAPCKQM 38
>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
Srb9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1223
Score = 27.5 bits (58), Expect = 2.0
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +1
Query: 103 KMCSF*VKLTLKL*LQPRSTF*LNSMLHGAATANLWHRNTP 225
K +F L LQP T N +L+ + NLW R+ P
Sbjct: 620 KSANFDFSFLKSLDLQPTITLGKNDLLNAILSQNLWFRSLP 660
>SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 515
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -3
Query: 657 FSSKVLEKHNIFIFSLQLLDHF 592
F+SK+ HNI FSL L+ F
Sbjct: 455 FASKIKPSHNIISFSLSLVKRF 476
>SPBC4B4.11 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 113
Score = 26.6 bits (56), Expect = 3.4
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -2
Query: 568 LGHQQLEQLKGKFWLWLSSGRKETKYNNSIGID 470
+G E++ GKF W RK TK GID
Sbjct: 43 IGRDTAEKVNGKFESWDGLFRKSTKTMKKEGID 75
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -3
Query: 681 SSSSYLTRFSSKVLEKHNIFIFSLQLLDHFLIAD 580
S YLT S+ KHN+ +F+ L+D L D
Sbjct: 1935 SPLQYLTCESTSTSWKHNLLVFARNLMDGSLQND 1968
>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1379
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +2
Query: 428 PAVEVTSAEQAKELIDANTVIVFGFFSTRAQPEPK 532
PAVE +K+ +A ++ F FF+ +P K
Sbjct: 219 PAVEKLKTSASKQAAEAQSLREFDFFTPTPEPSDK 253
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,597,622
Number of Sequences: 5004
Number of extensions: 49318
Number of successful extensions: 160
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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