Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30933.Seq
         (698 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    23   1.8  
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    22   5.5  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   7.3  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   7.3  

>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
 Frame = -2

Query: 541 HLPLSNVTCRSEVIHLMAIRTSTECQI-ITYSTVETLALEAPKNLSELR-IHID*HRM*Y 368
           HL L NV+  S+V    A+ T     + + ++++ T+ALE   N+S LR +++D + +  
Sbjct: 449 HLNLDNVSL-SQV---PALSTPNLLSLSLAFNSLPTVALEVAGNISSLRYLNLDYNDL-- 502

Query: 367 SLNPIRC*MKRKKCYLSIEG 308
           S  PI      +  +LS+EG
Sbjct: 503 SAVPIVTHSLTELRHLSLEG 522


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 319 SIEGILFVDLWSSW 278
           +IEGI+F +L  SW
Sbjct: 272 AIEGIIFFNLAKSW 285


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 310 PQLINNIFSSSFSTGWDLKSITCDVNRYEFEALIS 414
           P  INN  S +  TG  +++ + D N  E  ++IS
Sbjct: 754 PHDINNPLSVNQLTGQCVRNDSSDTNGKETRSIIS 788


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 310 PQLINNIFSSSFSTGWDLKSITCDVNRYEFEALIS 414
           P  INN  S +  TG  +++ + D N  E  ++IS
Sbjct: 646 PHDINNPLSVNQLTGQCVRNDSSDTNGKETRSIIS 680


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,728
Number of Sequences: 336
Number of extensions: 3273
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)