Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30933.Seq
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    27   3.4  
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce...    26   6.0  
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    26   6.0  

>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 7/67 (10%)
 Frame = -1

Query: 401 SNSYRLTSHVILFKSHPVLNEE----EKMLFIN*GNIVCRSLVELDW---SIILVNQ*LS 243
           +N  R  S+ +LFK+H  +N E    E+  F   G +  RS   LDW    + L++  L 
Sbjct: 664 ANRIRDLSYQLLFKNHESVNLELRDPEREFFFE-GIVQRRSDSRLDWLDIHLFLLDNYLI 722

Query: 242 LVKANSD 222
           + KA  D
Sbjct: 723 MAKARKD 729


>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 576

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = -2

Query: 550 NCGHLPLSNVTCRSEVIHLMAIRTSTECQIITYSTVETLALEAPKNLS 407
           N G  PL+N   +S   H     T++   + TY     L+  A  NLS
Sbjct: 6   NAGIQPLTNSISQSASAHPELYHTTSHESVSTYQLQSQLSHSATSNLS 53


>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1040

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = +1

Query: 331 FSSSFSTGWDLKSITCDVNRYEFEALISFLEPQGPMF 441
           +SSS S+   LK+   D+NR+E E  I+FL  +  +F
Sbjct: 36  YSSSASSDQLLKN---DINRHEMERRIAFLNRKQALF 69


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,651,082
Number of Sequences: 5004
Number of extensions: 53611
Number of successful extensions: 92
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)