Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30933.Seq
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22238| Best HMM Match : CMAS (HMM E-Value=3.5e-15)                  30   1.6  
SB_857| Best HMM Match : Mago_nashi (HMM E-Value=0)                    30   2.1  
SB_13424| Best HMM Match : Pox_A32 (HMM E-Value=0.073)                 29   2.7  
SB_52976| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_34635| Best HMM Match : PE (HMM E-Value=0.82)                       29   4.8  

>SB_22238| Best HMM Match : CMAS (HMM E-Value=3.5e-15)
          Length = 1605

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = -1

Query: 392 YRLTSHVILFKSHPVLNEEEKMLFIN*GNIVCRSLVELDWSIILVN 255
           Y L +  +LF+S P+    EK ++ +  N+ C  + E DW  + ++
Sbjct: 301 YDLNTKELLFQSAPMYQYLEKKMYRDAYNVACLGVTEGDWRALALD 346


>SB_857| Best HMM Match : Mago_nashi (HMM E-Value=0)
          Length = 900

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 17/63 (26%), Positives = 31/63 (49%)
 Frame = +1

Query: 127 YENKSLEYIFNHQTKLNK*NNGSRFDESVLYKSEFAFTRESH*LTRIIDQSSSTKDLQTI 306
           + ++ LE+ F    KL   NN +  +++++ K  +        L RIID S   K+   +
Sbjct: 19  FGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVYCHKAVIEELKRIIDDSEVMKEDDAL 78

Query: 307 FPQ 315
           +PQ
Sbjct: 79  WPQ 81


>SB_13424| Best HMM Match : Pox_A32 (HMM E-Value=0.073)
          Length = 1387

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 18/54 (33%), Positives = 28/54 (51%)
 Frame = +1

Query: 265  IIDQSSSTKDLQTIFPQLINNIFSSSFSTGWDLKSITCDVNRYEFEALISFLEP 426
            I+D  +++KD++  + QL+N  FS+       L SIT    R    AL+ F  P
Sbjct: 1204 ILDDCAASKDVKRRYDQLVNLAFSARHVITQQLTSITKPF-RENIAALVFFYTP 1256


>SB_52976| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 138

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/34 (50%), Positives = 23/34 (67%)
 Frame = -1

Query: 458 NL*HSRNIGP*GSKKLIRASNSYRLTSHVILFKS 357
           +L HSRN+    SK L R+++ YRL+SH IL  S
Sbjct: 50  DLYHSRNLYR--SKDLYRSNDLYRLSSHEILADS 81


>SB_34635| Best HMM Match : PE (HMM E-Value=0.82)
          Length = 436

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 480 VRIAIKCITSDLQVTLERGRCPQFYADMLTADAQ 581
           ++  ++  T+DLQ   ERG C  +Y   L  D Q
Sbjct: 19  IQALVRASTADLQSLGERGNCNHYYNPTLKVDQQ 52


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,428,154
Number of Sequences: 59808
Number of extensions: 353886
Number of successful extensions: 737
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)