Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30933.Seq
         (698 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY058593-1|AAL13822.1|  767|Drosophila melanogaster LD28817p pro...    61   2e-09
AE014297-1398|AAF54712.1|  767|Drosophila melanogaster CG6962-PA...    61   2e-09
AY070712-1|AAL48183.1|  437|Drosophila melanogaster SD05403p pro...    29   8.0  
AJ005962-1|CAA06785.1|  437|Drosophila melanogaster clathrin-ass...    29   8.0  
AF110232-1|AAF14248.1|  437|Drosophila melanogaster clathrin-ass...    29   8.0  
AE014297-3160|AAF56002.3|  437|Drosophila melanogaster CG7057-PB...    29   8.0  
AE014297-3159|AAF56001.1|  437|Drosophila melanogaster CG7057-PA...    29   8.0  

>AY058593-1|AAL13822.1|  767|Drosophila melanogaster LD28817p
           protein.
          Length = 767

 Score = 60.9 bits (141), Expect = 2e-09
 Identities = 32/87 (36%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
 Frame = +1

Query: 250 H*LTRIIDQSSSTKDLQTIFPQLINNIFSSSFST-GWDLKSITCDVNRYEFEALISFLEP 426
           H L+ + D+ S  + +Q IFP ++++IF    +  GW L++ T + N  +F+ L  F   
Sbjct: 27  HELSILFDRCS-LRQVQEIFPHVVHSIFGIDGNPLGWGLRTTTLENNPVQFQTLHQFFGV 85

Query: 427 QGPMFRLCYRLLSDTQLKYELPLNVLP 507
            GP+  +C+RLL D Q K+EL +N+LP
Sbjct: 86  CGPLMHVCHRLLVD-QYKFELDINLLP 111


>AE014297-1398|AAF54712.1|  767|Drosophila melanogaster CG6962-PA
           protein.
          Length = 767

 Score = 60.9 bits (141), Expect = 2e-09
 Identities = 32/87 (36%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
 Frame = +1

Query: 250 H*LTRIIDQSSSTKDLQTIFPQLINNIFSSSFST-GWDLKSITCDVNRYEFEALISFLEP 426
           H L+ + D+ S  + +Q IFP ++++IF    +  GW L++ T + N  +F+ L  F   
Sbjct: 27  HELSILFDRCS-LRQVQEIFPHVVHSIFGIDGNPLGWGLRTTTLENNPVQFQTLHQFFGV 85

Query: 427 QGPMFRLCYRLLSDTQLKYELPLNVLP 507
            GP+  +C+RLL D Q K+EL +N+LP
Sbjct: 86  CGPLMHVCHRLLVD-QYKFELDINLLP 111


>AY070712-1|AAL48183.1|  437|Drosophila melanogaster SD05403p
           protein.
          Length = 437

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +1

Query: 382 VNRYEFEALISFLEPQGPMFRLCYRLLSDTQLKYELPLNVLPLI 513
           ++++E E  ISF+ P G    + YR   D      LP  V+PL+
Sbjct: 256 LSKFETEHSISFIPPDGEFELMRYRTTKD----ISLPFRVIPLV 295


>AJ005962-1|CAA06785.1|  437|Drosophila melanogaster
           clathrin-associated protein protein.
          Length = 437

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +1

Query: 382 VNRYEFEALISFLEPQGPMFRLCYRLLSDTQLKYELPLNVLPLI 513
           ++++E E  ISF+ P G    + YR   D      LP  V+PL+
Sbjct: 256 LSKFETEHSISFIPPDGEFELMRYRTTKD----ISLPFRVIPLV 295


>AF110232-1|AAF14248.1|  437|Drosophila melanogaster
           clathrin-associated adaptor complexAP-2 medium chain
           protein.
          Length = 437

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +1

Query: 382 VNRYEFEALISFLEPQGPMFRLCYRLLSDTQLKYELPLNVLPLI 513
           ++++E E  ISF+ P G    + YR   D      LP  V+PL+
Sbjct: 256 LSKFETEHSISFIPPDGEFELMRYRTTKD----ISLPFRVIPLV 295


>AE014297-3160|AAF56002.3|  437|Drosophila melanogaster CG7057-PB,
           isoform B protein.
          Length = 437

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +1

Query: 382 VNRYEFEALISFLEPQGPMFRLCYRLLSDTQLKYELPLNVLPLI 513
           ++++E E  ISF+ P G    + YR   D      LP  V+PL+
Sbjct: 256 LSKFETEHSISFIPPDGEFELMRYRTTKD----ISLPFRVIPLV 295


>AE014297-3159|AAF56001.1|  437|Drosophila melanogaster CG7057-PA,
           isoform A protein.
          Length = 437

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +1

Query: 382 VNRYEFEALISFLEPQGPMFRLCYRLLSDTQLKYELPLNVLPLI 513
           ++++E E  ISF+ P G    + YR   D      LP  V+PL+
Sbjct: 256 LSKFETEHSISFIPPDGEFELMRYRTTKD----ISLPFRVIPLV 295


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,520,440
Number of Sequences: 53049
Number of extensions: 503890
Number of successful extensions: 677
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3067209849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)