Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30933.Seq
         (698 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016682-9|AAB66189.3|  441|Caenorhabditis elegans Hypothetical ...    31   1.0  
L26290-1|AAA27981.1|  441|Caenorhabditis elegans clathrin-associ...    30   1.4  
AF099001-8|AAP13778.1|  435|Caenorhabditis elegans Dumpy : short...    30   1.4  
AF099001-7|AAP13777.1|  441|Caenorhabditis elegans Dumpy : short...    30   1.4  
U58734-6|AAB52505.3|  383|Caenorhabditis elegans Hypothetical pr...    28   5.6  
Z50742-1|CAA90614.2|  605|Caenorhabditis elegans Hypothetical pr...    27   9.8  
AL021175-9|CAA15969.2|  444|Caenorhabditis elegans Hypothetical ...    27   9.8  

>AF016682-9|AAB66189.3|  441|Caenorhabditis elegans Hypothetical
           protein T07D3.9a protein.
          Length = 441

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
 Frame = +1

Query: 268 IDQSSSTKDLQTIFPQLINNIFSSSFSTGWD------LKSITCDVNRYEFEALISFLEPQ 429
           I + S T+ L+TIFP+   +I S  FST  D      + S  C V + + +   SF E +
Sbjct: 10  ISRFSQTRSLRTIFPKTTVSIASRPFSTDPDSLVDKMVSSTFCHVAKCQPD---SFSEEE 66

Query: 430 GPMFRLCYRLLSDTQLKYELPLN 498
               +L  R +S +  K+ +PL+
Sbjct: 67  KNSKKLEPRTISHSYRKFVIPLS 89


>L26290-1|AAA27981.1|  441|Caenorhabditis elegans
           clathrin-associated protein homologueprotein.
          Length = 441

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +1

Query: 382 VNRYEFEALISFLEPQGPMFRLCYRLLSDTQLKYELPLNVLPLI 513
           + ++E E  ISF+ P G    + YR   D Q    LP  V+PL+
Sbjct: 258 LTKFETEHAISFIPPDGEYELMRYRTTKDIQ----LPFRVIPLV 297


>AF099001-8|AAP13778.1|  435|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 23, isoform b protein.
          Length = 435

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +1

Query: 382 VNRYEFEALISFLEPQGPMFRLCYRLLSDTQLKYELPLNVLPLI 513
           + ++E E  ISF+ P G    + YR   D Q    LP  V+PL+
Sbjct: 252 LTKFETEHAISFIPPDGEYELMRYRTTKDIQ----LPFRVIPLV 291


>AF099001-7|AAP13777.1|  441|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 23, isoform a protein.
          Length = 441

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +1

Query: 382 VNRYEFEALISFLEPQGPMFRLCYRLLSDTQLKYELPLNVLPLI 513
           + ++E E  ISF+ P G    + YR   D Q    LP  V+PL+
Sbjct: 258 LTKFETEHAISFIPPDGEYELMRYRTTKDIQ----LPFRVIPLV 297


>U58734-6|AAB52505.3|  383|Caenorhabditis elegans Hypothetical
           protein T27A10.7 protein.
          Length = 383

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = +1

Query: 247 SH*LTRIIDQSSSTKDLQTIFPQLINNIFSSSFSTGWDLK-SITCDVNRYEFEALIS 414
           +H   +I +  S TKD+   +P+   +     +  GWD K  +     RY  E L++
Sbjct: 15  AHQKDKIAELRSKTKDILATYPEYDTDFSLLRWLMGWDYKIDVIVPKMRYAVETLVN 71


>Z50742-1|CAA90614.2|  605|Caenorhabditis elegans Hypothetical
           protein K09A11.1 protein.
          Length = 605

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -2

Query: 586 IVCASAVNMSA*NCGHLPLSNVTCRSEVIHLMAIRTSTE 470
           +VC    ++    C HL +S+V C ++ +HL A    ++
Sbjct: 235 VVCRDYNSIVENACDHLKISSVNCFNQQLHLAACEAKSK 273


>AL021175-9|CAA15969.2|  444|Caenorhabditis elegans Hypothetical
           protein Y6E2A.8 protein.
          Length = 444

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +1

Query: 391 YEFEALISFLEPQGPMFRLCY 453
           Y F  ++ F+ P  P+F++CY
Sbjct: 7   YSFFHVLKFVRPGSPLFKICY 27


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,305,270
Number of Sequences: 27780
Number of extensions: 282664
Number of successful extensions: 535
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 535
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)