Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30928.Seq
(698 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_42281| Best HMM Match : No HMM Matches (HMM E-Value=.) 124 5e-29
SB_56255| Best HMM Match : Arf (HMM E-Value=0) 122 2e-28
SB_11310| Best HMM Match : Arf (HMM E-Value=0) 112 2e-25
SB_53421| Best HMM Match : Arf (HMM E-Value=0) 108 5e-24
SB_56254| Best HMM Match : Arf (HMM E-Value=5.3e-31) 98 7e-21
SB_57342| Best HMM Match : Arf (HMM E-Value=0) 97 2e-20
SB_32972| Best HMM Match : Arf (HMM E-Value=2.66247e-44) 90 2e-18
SB_37042| Best HMM Match : Arf (HMM E-Value=0) 85 4e-17
SB_18358| Best HMM Match : Arf (HMM E-Value=0) 83 2e-16
SB_39092| Best HMM Match : Arf (HMM E-Value=8e-36) 75 6e-14
SB_6793| Best HMM Match : No HMM Matches (HMM E-Value=.) 64 8e-11
SB_55155| Best HMM Match : No HMM Matches (HMM E-Value=.) 62 4e-10
SB_7588| Best HMM Match : DcpS (HMM E-Value=0) 60 2e-09
SB_214| Best HMM Match : Arf (HMM E-Value=0) 57 1e-08
SB_15207| Best HMM Match : Arf (HMM E-Value=1.9e-05) 57 2e-08
SB_51371| Best HMM Match : No HMM Matches (HMM E-Value=.) 56 3e-08
SB_2235| Best HMM Match : Arf (HMM E-Value=3.1e-13) 45 7e-05
SB_8302| Best HMM Match : G-alpha (HMM E-Value=0) 43 2e-04
SB_977| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 3e-04
SB_49453| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_31701| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001
SB_17958| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.003
SB_24842| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.008
SB_27557| Best HMM Match : Ras (HMM E-Value=0) 37 0.014
SB_44625| Best HMM Match : Ras (HMM E-Value=0) 37 0.018
SB_22342| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.032
SB_4971| Best HMM Match : Ras (HMM E-Value=0) 36 0.032
SB_10811| Best HMM Match : Ras (HMM E-Value=0) 36 0.032
SB_24843| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.29
SB_32061| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.29
SB_50855| Best HMM Match : Ras (HMM E-Value=0) 32 0.39
SB_33743| Best HMM Match : Ras (HMM E-Value=2e-34) 31 1.2
SB_13045| Best HMM Match : Ras (HMM E-Value=0) 30 2.1
SB_33745| Best HMM Match : Ras (HMM E-Value=2.5e-21) 30 2.1
SB_50523| Best HMM Match : Ras (HMM E-Value=0) 29 3.6
SB_19345| Best HMM Match : Arf (HMM E-Value=3.3e-05) 29 3.6
SB_39864| Best HMM Match : Ras (HMM E-Value=1.6e-30) 29 3.6
SB_28309| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_34767| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_40811| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
>SB_42281| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 124 bits (300), Expect = 5e-29
Identities = 56/88 (63%), Positives = 69/88 (78%)
Frame = +2
Query: 254 YKLQVGEVVTTIPTIGFNVEQVTYKNLKFQVWDLGGQTSIRPYWRCYYGNTDAIIYVVDS 433
YKL++GE+VTTIPTIGFNVE V YKN+ F VWD+GGQ IRP WR Y+ NT +IYVVDS
Sbjct: 35 YKLKLGEIVTTIPTIGFNVESVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIYVVDS 94
Query: 434 ADRDRIGISKDELVHMLREEELANAXSL 517
DR+R+ SK+EL ML+E+EL +A L
Sbjct: 95 NDRERVNESKEELNKMLQEDELKDAVVL 122
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/32 (59%), Positives = 23/32 (71%)
Frame = +3
Query: 171 SYFRGLLGAREMRILILGLDGAGKTTILINCK 266
S F L G ++MRIL++GLD AGKTTIL K
Sbjct: 7 SLFTRLFGKKQMRILMVGLDAAGKTTILYKLK 38
Score = 27.9 bits (59), Expect = 8.4
Identities = 19/67 (28%), Positives = 32/67 (47%)
Frame = +1
Query: 496 ISERXLVVLANKQDMAGCLT*PRYTQALGLXTPCAIEXSQIL*DFSRXKAXGLDSGRMDW 675
+ + ++V+ANKQD+ L+ T+ LGL + + + + GL G +DW
Sbjct: 116 LKDAVVLVMANKQDLPNALSVSEITEKLGLQS--IRDRQWYIQAACATQGTGLYEG-LDW 172
Query: 676 LSKRAFK 696
LS K
Sbjct: 173 LSNELSK 179
>SB_56255| Best HMM Match : Arf (HMM E-Value=0)
Length = 181
Score = 122 bits (295), Expect = 2e-28
Identities = 54/88 (61%), Positives = 69/88 (78%)
Frame = +2
Query: 254 YKLQVGEVVTTIPTIGFNVEQVTYKNLKFQVWDLGGQTSIRPYWRCYYGNTDAIIYVVDS 433
YKL++GE+VTTIPTIGFNVE V YKN+ F VWD+GGQ IRP WR Y+ NT +I+VVDS
Sbjct: 35 YKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94
Query: 434 ADRDRIGISKDELVHMLREEELANAXSL 517
DR+R+G +++EL ML E+EL +A L
Sbjct: 95 NDRERVGEAREELNRMLNEDELRDAVLL 122
Score = 49.6 bits (113), Expect = 2e-06
Identities = 24/38 (63%), Positives = 29/38 (76%), Gaps = 1/38 (2%)
Frame = +3
Query: 156 MGGLFS-YFRGLLGAREMRILILGLDGAGKTTILINCK 266
MGG+F+ F GL G +EMRIL++GLD AGKTTIL K
Sbjct: 1 MGGMFAKLFAGLFGKKEMRILMVGLDAAGKTTILYKLK 38
>SB_11310| Best HMM Match : Arf (HMM E-Value=0)
Length = 255
Score = 112 bits (270), Expect = 2e-25
Identities = 54/98 (55%), Positives = 66/98 (67%)
Frame = +2
Query: 254 YKLQVGEVVTTIPTIGFNVEQVTYKNLKFQVWDLGGQTSIRPYWRCYYGNTDAIIYVVDS 433
Y L++ E V TIPTIGFNVE V YKN+KF VWD+GGQ IR WR Y+ T +I+VVDS
Sbjct: 108 YHLKLDEPVNTIPTIGFNVEVVEYKNIKFTVWDIGGQDKIRLLWRLYFQETQGLIFVVDS 167
Query: 434 ADRDRIGISKDELVHMLREEELANAXSLF*PTNRTWPD 547
DRDRI +K+EL +L+EEEL A L + PD
Sbjct: 168 NDRDRIQEAKEELFKLLKEEELKRAALLVLANKQDLPD 205
Score = 45.6 bits (103), Expect = 4e-05
Identities = 23/40 (57%), Positives = 30/40 (75%), Gaps = 1/40 (2%)
Frame = +3
Query: 150 NKMGG-LFSYFRGLLGAREMRILILGLDGAGKTTILINCK 266
+KMG + S FR LLG E+R+L++GLD AGKTTIL + K
Sbjct: 72 SKMGNSVLSLFRRLLGKDELRLLMVGLDAAGKTTILYHLK 111
>SB_53421| Best HMM Match : Arf (HMM E-Value=0)
Length = 625
Score = 108 bits (259), Expect = 5e-24
Identities = 48/82 (58%), Positives = 62/82 (75%)
Frame = +2
Query: 254 YKLQVGEVVTTIPTIGFNVEQVTYKNLKFQVWDLGGQTSIRPYWRCYYGNTDAIIYVVDS 433
Y+L++ EVV+T+PT+GFNVE VTYKN+ F VWD+GGQ IR WR YY II+VVDS
Sbjct: 14 YRLKLEEVVSTVPTLGFNVETVTYKNISFTVWDIGGQDKIRALWRVYYQGCQGIIFVVDS 73
Query: 434 ADRDRIGISKDELVHMLREEEL 499
ADR+R +++EL +L EEEL
Sbjct: 74 ADRERAEEARNELHKLLAEEEL 95
>SB_56254| Best HMM Match : Arf (HMM E-Value=5.3e-31)
Length = 650
Score = 97.9 bits (233), Expect = 7e-21
Identities = 48/96 (50%), Positives = 62/96 (64%)
Frame = +2
Query: 230 RCRKDDNSYKLQVGEVVTTIPTIGFNVEQVTYKNLKFQVWDLGGQTSIRPYWRCYYGNTD 409
R R + K + +V+ P GFNVE V YKN+ F VWD+GGQ IRP WR Y+ NT
Sbjct: 478 RSRYKGSRQKTHIQAMVS--PVQGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQ 535
Query: 410 AIIYVVDSADRDRIGISKDELVHMLREEELANAXSL 517
+I+VVDS DR+R G +K+EL ML E+EL +A L
Sbjct: 536 GLIFVVDSNDRERAGEAKEELSRMLAEDELRDAVLL 571
>SB_57342| Best HMM Match : Arf (HMM E-Value=0)
Length = 457
Score = 96.7 bits (230), Expect = 2e-20
Identities = 47/103 (45%), Positives = 65/103 (63%), Gaps = 1/103 (0%)
Frame = +2
Query: 194 CKGNADFDTWIGRCRKDDNSYKLQVGEVVTTIPTIGFNVEQVT-YKNLKFQVWDLGGQTS 370
C A + GR RK YKL++ E V T+PT+ FNVE ++ KN+ F VWD+GGQ
Sbjct: 107 CVVPAKYSLRSGRGRKTTILYKLKLKETVNTVPTVAFNVETISPCKNITFSVWDIGGQDK 166
Query: 371 IRPYWRCYYGNTDAIIYVVDSADRDRIGISKDELVHMLREEEL 499
IR WR Y+ + II+VVDSAD++RI ++EL +L+ EL
Sbjct: 167 IRRLWRHYFQGAEGIIFVVDSADKERIFEVREELTRVLQHSEL 209
>SB_32972| Best HMM Match : Arf (HMM E-Value=2.66247e-44)
Length = 257
Score = 89.8 bits (213), Expect = 2e-18
Identities = 39/50 (78%), Positives = 43/50 (86%)
Frame = +2
Query: 359 GQTSIRPYWRCYYGNTDAIIYVVDSADRDRIGISKDELVHMLREEELANA 508
GQTSIRPYWRCYY NTDA+IYVVDS D+DRIGISK EL+ ML E+EL A
Sbjct: 155 GQTSIRPYWRCYYANTDAVIYVVDSVDKDRIGISKQELLAMLEEDELKKA 204
Score = 31.5 bits (68), Expect = 0.68
Identities = 21/67 (31%), Positives = 32/67 (47%)
Frame = +1
Query: 475 AYVKGRRISERXLVVLANKQDMAGCLT*PRYTQALGLXTPCAIEXSQIL*DFSRXKAXGL 654
A ++ + + L+V ANKQDM G ++ + ALGL + + S K GL
Sbjct: 194 AMLEEDELKKAILIVFANKQDMEGAMSSSEVSNALGL--SALKSRTWAIFKTSAVKGEGL 251
Query: 655 DSGRMDW 675
D M+W
Sbjct: 252 DEA-MEW 257
>SB_37042| Best HMM Match : Arf (HMM E-Value=0)
Length = 188
Score = 85.4 bits (202), Expect = 4e-17
Identities = 40/82 (48%), Positives = 58/82 (70%), Gaps = 1/82 (1%)
Frame = +2
Query: 254 YKLQVGEVVTTIPTIGFNVEQVT-YKNLKFQVWDLGGQTSIRPYWRCYYGNTDAIIYVVD 430
YKL++ E V+TIPTIGFNVE + KN+ +WD+GGQ IRP WR Y+ T+ +++VVD
Sbjct: 37 YKLKLKETVSTIPTIGFNVETLQPTKNVTLTIWDVGGQDKIRPLWRHYFQGTEGLLFVVD 96
Query: 431 SADRDRIGISKDELVHMLREEE 496
S+D R+ +K+EL +L +E
Sbjct: 97 SSDVLRMPEAKEELHGVLDSDE 118
Score = 39.1 bits (87), Expect = 0.003
Identities = 22/41 (53%), Positives = 29/41 (70%)
Frame = +3
Query: 144 LINKMGGLFSYFRGLLGAREMRILILGLDGAGKTTILINCK 266
L++K+ LFS F G R++RI++LGLD AGKTTIL K
Sbjct: 4 LLSKVITLFSEF----GNRQVRIVMLGLDAAGKTTILYKLK 40
>SB_18358| Best HMM Match : Arf (HMM E-Value=0)
Length = 214
Score = 83.4 bits (197), Expect = 2e-16
Identities = 38/99 (38%), Positives = 59/99 (59%), Gaps = 1/99 (1%)
Frame = +2
Query: 254 YKLQVGEVVTTIPTIGFNVEQVT-YKNLKFQVWDLGGQTSIRPYWRCYYGNTDAIIYVVD 430
Y+ + E V T+PT FNVE + +K ++F+VWD+GG+ RP W+ Y TDA+IYVVD
Sbjct: 39 YRNKFREYVNTVPTTAFNVETIRPFKGIRFKVWDIGGREQNRPLWKAYARQTDAVIYVVD 98
Query: 431 SADRDRIGISKDELVHMLREEELANAXSLF*PTNRTWPD 547
S ++ ++DEL ++L +L A L + P+
Sbjct: 99 STSAGKLEEARDELFNLLNSAQLNGAPILIFANKQDCPN 137
>SB_39092| Best HMM Match : Arf (HMM E-Value=8e-36)
Length = 260
Score = 74.9 bits (176), Expect = 6e-14
Identities = 31/72 (43%), Positives = 49/72 (68%)
Frame = +2
Query: 287 IPTIGFNVEQVTYKNLKFQVWDLGGQTSIRPYWRCYYGNTDAIIYVVDSADRDRIGISKD 466
IPT+GFN+ +V+ N+ +VWD+GGQ R W Y + I+Y+VD+AD D++ SK+
Sbjct: 50 IPTVGFNMRKVSKGNVTIKVWDIGGQPRFRSMWERYCRGVNCIVYMVDAADHDKLEASKN 109
Query: 467 ELVHMLREEELA 502
EL ++L + +LA
Sbjct: 110 ELHNLLEKPQLA 121
>SB_6793| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 255
Score = 64.5 bits (150), Expect = 8e-11
Identities = 28/53 (52%), Positives = 38/53 (71%)
Frame = +2
Query: 335 KFQVWDLGGQTSIRPYWRCYYGNTDAIIYVVDSADRDRIGISKDELVHMLREE 493
K +WD+GGQ S+R YWR Y+ +TD +I+VVDSAD+ R+ K EL +L EE
Sbjct: 3 KLNIWDVGGQRSLRSYWRNYFESTDGLIWVVDSADQRRLADCKMELQGLLVEE 55
>SB_55155| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 487
Score = 62.1 bits (144), Expect = 4e-10
Identities = 27/68 (39%), Positives = 39/68 (57%)
Frame = +2
Query: 281 TTIPTIGFNVEQVTYKNLKFQVWDLGGQTSIRPYWRCYYGNTDAIIYVVDSADRDRIGIS 460
+T T GFNV +T L +W++GG R YW + +T ++YVVDS+D DR S
Sbjct: 196 STTKTEGFNVVCLTTDGLNLNIWEIGGDEKYRAYWPNFIADTQLLVYVVDSSDPDRFNES 255
Query: 461 KDELVHML 484
+D L +L
Sbjct: 256 RDNLKSLL 263
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = +3
Query: 201 EMRILILGLDGAGKTTIL 254
E RIL+LGLDG+GK+ L
Sbjct: 166 EKRILVLGLDGSGKSVFL 183
>SB_7588| Best HMM Match : DcpS (HMM E-Value=0)
Length = 446
Score = 59.7 bits (138), Expect = 2e-09
Identities = 26/66 (39%), Positives = 39/66 (59%)
Frame = +2
Query: 350 DLGGQTSIRPYWRCYYGNTDAIIYVVDSADRDRIGISKDELVHMLREEELANAXSLF*PT 529
D+GGQ IRP WR Y+ + +I+VVD ADRDRI ++ EL ++ + E+ + L
Sbjct: 143 DVGGQDKIRPLWRHYFAGSQGLIFVVDCADRDRIDEARKELQRIINDREMKDVIILIFAN 202
Query: 530 NRTWPD 547
+ PD
Sbjct: 203 KQDLPD 208
>SB_214| Best HMM Match : Arf (HMM E-Value=0)
Length = 148
Score = 57.2 bits (132), Expect = 1e-08
Identities = 24/77 (31%), Positives = 46/77 (59%)
Frame = +2
Query: 287 IPTIGFNVEQVTYKNLKFQVWDLGGQTSIRPYWRCYYGNTDAIIYVVDSADRDRIGISKD 466
+PT+ E+++ ++F +DLGG R W+ Y+ + I++++D AD +R+ SK
Sbjct: 5 VPTLHPTSEELSMGGMRFTTFDLGGHRQARRIWKDYFPAVNGIVFIIDCADFERLAESKK 64
Query: 467 ELVHMLREEELANAXSL 517
EL +L +E+L++ L
Sbjct: 65 ELDSLLADEQLSSCPVL 81
>SB_15207| Best HMM Match : Arf (HMM E-Value=1.9e-05)
Length = 259
Score = 56.8 bits (131), Expect = 2e-08
Identities = 23/50 (46%), Positives = 33/50 (66%)
Frame = +2
Query: 257 KLQVGEVVTTIPTIGFNVEQVTYKNLKFQVWDLGGQTSIRPYWRCYYGNT 406
K+++ V + GFNVE V +++LKF +WD+GG +RP WR YY NT
Sbjct: 208 KMEMRAVALGLDGAGFNVETVEHRSLKFTIWDVGGLQKLRPLWRHYYLNT 257
>SB_51371| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1325
Score = 56.0 bits (129), Expect = 3e-08
Identities = 23/49 (46%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Frame = +2
Query: 272 EVVTTIPTIGFNVEQVTYKN-LKFQVWDLGGQTSIRPYWRCYYGNTDAI 415
+V+ PT GFN++ V K + VWD+GGQ IRPYW+ Y+ NTD +
Sbjct: 41 DVLHITPTQGFNIKSVQSKGGFRLNVWDIGGQRKIRPYWKNYFENTDIL 89
Score = 37.9 bits (84), Expect = 0.008
Identities = 21/33 (63%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
Frame = +3
Query: 162 GLFSYFRGLLGA--REMRILILGLDGAGKTTIL 254
GL S R L REMRIL+LGLD +GKTTIL
Sbjct: 2 GLLSLLRKLKSEKDREMRILLLGLDNSGKTTIL 34
>SB_2235| Best HMM Match : Arf (HMM E-Value=3.1e-13)
Length = 334
Score = 44.8 bits (101), Expect = 7e-05
Identities = 23/75 (30%), Positives = 45/75 (60%)
Frame = +2
Query: 326 KNLKFQVWDLGGQTSIRPYWRCYYGNTDAIIYVVDSADRDRIGISKDELVHMLREEELAN 505
KN+ F VWD+GGQ ++R ++ + + +IYVVDS D R +++ +L+ +L+E+ + +
Sbjct: 16 KNVHFAVWDIGGQPNLRKHY--FTDDKSGLIYVVDSTDIQR--LNEAQLLGILQEKVMVD 71
Query: 506 AXSLF*PTNRTWPDV 550
+ + P+V
Sbjct: 72 VPVVVVANKQDLPNV 86
>SB_8302| Best HMM Match : G-alpha (HMM E-Value=0)
Length = 315
Score = 43.2 bits (97), Expect = 2e-04
Identities = 24/70 (34%), Positives = 37/70 (52%)
Frame = +2
Query: 281 TTIPTIGFNVEQVTYKNLKFQVWDLGGQTSIRPYWRCYYGNTDAIIYVVDSADRDRIGIS 460
T + T G Q YK L F+++D+GGQ S R W + + AIIY V + D + +
Sbjct: 178 TRVKTTGIVEVQFDYKRLHFKLFDVGGQRSERKKWIHCFEDVTAIIYCVALSAYD-LSLE 236
Query: 461 KDELVHMLRE 490
+DE + + E
Sbjct: 237 EDESTNRMEE 246
>SB_977| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 765
Score = 42.7 bits (96), Expect = 3e-04
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Frame = +2
Query: 281 TTIPTIGFNVEQVTYKNLKFQVWDLGGQTSIRPYW-RCYYGNTDAIIYVVDSADRDRIGI 457
T + T G T+K+L F+++D+GGQ S R W C+ G T AII+ V + D +
Sbjct: 177 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVT-AIIFCVALSAYDLVLA 235
Query: 458 SKDELVHMLREEEL 499
+E+ M+ +L
Sbjct: 236 EDEEMNRMMESMKL 249
>SB_49453| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1117
Score = 42.3 bits (95), Expect = 4e-04
Identities = 24/70 (34%), Positives = 37/70 (52%)
Frame = +2
Query: 281 TTIPTIGFNVEQVTYKNLKFQVWDLGGQTSIRPYWRCYYGNTDAIIYVVDSADRDRIGIS 460
T + T G Q YK L F+++D+GGQ S R W + + AIIY V + D + +
Sbjct: 226 TRVKTTGIVEVQFDYKRLHFKLFDVGGQRSERKKWIHCFEDVTAIIYCVALSAYD-LTLE 284
Query: 461 KDELVHMLRE 490
+DE + + E
Sbjct: 285 EDESTNRMEE 294
>SB_31701| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 132
Score = 40.7 bits (91), Expect = 0.001
Identities = 16/38 (42%), Positives = 24/38 (63%)
Frame = +2
Query: 272 EVVTTIPTIGFNVEQVTYKNLKFQVWDLGGQTSIRPYW 385
E +TT T+G N+ ++T ++K WDLGGQ +R W
Sbjct: 55 EKITT--TVGLNIGKITISHVKLMFWDLGGQQELRTLW 90
Score = 32.3 bits (70), Expect = 0.39
Identities = 19/42 (45%), Positives = 24/42 (57%)
Frame = +3
Query: 141 KLINKMGGLFSYFRGLLGAREMRILILGLDGAGKTTILINCK 266
++ + GL+ Y L E ILILGLD AGKTT+L K
Sbjct: 4 EMFTLLSGLWKY---LFQKDEYFILILGLDNAGKTTLLEQIK 42
>SB_17958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 271
Score = 39.5 bits (88), Expect = 0.003
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = +2
Query: 296 IGFNVEQVTYKNLKFQVWDLGGQTSIRPYWRCYYGNTDAIIYVVDSADR 442
+G V + +K Q WD GQ R + YY N DA+I V D +R
Sbjct: 48 VGTRVLDIHGDRVKLQCWDTAGQEKFRGITQSYYRNADAVILVFDITNR 96
>SB_24842| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 156
Score = 37.9 bits (84), Expect = 0.008
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Frame = +2
Query: 290 PTIG--FNVEQVTY--KNLKFQVWDLGGQTSIRPYWRCYYGNTDAIIYVVDSADR 442
PTIG F ++ V + +K Q+WD GQ R + YY N D +I D ++
Sbjct: 38 PTIGVDFTIKTVDVDGEKVKLQIWDTAGQERFRSITQSYYHNADGVIVTYDITNK 92
>SB_27557| Best HMM Match : Ras (HMM E-Value=0)
Length = 184
Score = 37.1 bits (82), Expect = 0.014
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Frame = +2
Query: 290 PTIG--FNVEQVTYKN---LKFQVWDLGGQTSIRPYWRCYYGNTDAIIYVVDSADRD 445
PT+G F+V + K +K Q+WD GQ R YY NT + + D +RD
Sbjct: 44 PTVGVDFHVRVLELKGDVRIKLQIWDTAGQERFRSITYSYYRNTVGCLIIYDITNRD 100
>SB_44625| Best HMM Match : Ras (HMM E-Value=0)
Length = 128
Score = 36.7 bits (81), Expect = 0.018
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Frame = +2
Query: 269 GEVVTTIPTIGFNVEQVTY--KNLKFQVWDLGGQTSIRPYWRCYYGNTDAIIYVVDSADR 442
G +TTI + F + + + +K Q+WD GQ R YY T +I V D
Sbjct: 4 GSYITTIG-VDFKIRTINIDGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSA 62
Query: 443 D 445
D
Sbjct: 63 D 63
>SB_22342| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 778
Score = 35.9 bits (79), Expect = 0.032
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Frame = +2
Query: 287 IPTIG--FNVEQVTY--KNLKFQVWDLGGQTSIRPYWRCYYGNTDAIIYVVDSADRD 445
I TIG F + + K +K Q+WD GQ R YY II V D D++
Sbjct: 59 ISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQE 115
>SB_4971| Best HMM Match : Ras (HMM E-Value=0)
Length = 209
Score = 35.9 bits (79), Expect = 0.032
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Frame = +2
Query: 281 TTIPTIG--FNVEQVTY--KNLKFQVWDLGGQTSIRPYWRCYYGNTDAIIYVVD 430
T I TIG F + +T K +K Q+WD GQ R YY + I+ + D
Sbjct: 36 TYISTIGVDFKIRTLTVDGKTIKLQIWDTAGQERFRTLTTAYYRSAHGIVLIYD 89
>SB_10811| Best HMM Match : Ras (HMM E-Value=0)
Length = 304
Score = 35.9 bits (79), Expect = 0.032
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +2
Query: 299 GFNVEQVTYKNLKFQVWDLGGQTSIRPYWRCYYGNTDAIIYVVDSADRD 445
G + V K++K Q+WD GQ R R YY + V D + R+
Sbjct: 133 GSKIVNVGGKSVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDISSRE 181
>SB_24843| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 265
Score = 32.7 bits (71), Expect = 0.29
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +2
Query: 332 LKFQVWDLGGQTSIRPYWRC-YYGNTDAIIYVVD 430
+K Q+WD GQ R C YY N +A++++ D
Sbjct: 95 VKLQLWDTAGQERFRKSMVCHYYRNVNAVVFMYD 128
>SB_32061| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 919
Score = 32.7 bits (71), Expect = 0.29
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Frame = +2
Query: 296 IGFNVEQVTYKN--LKFQVWDLGGQTSIRPYWRCYYGNTDAIIYVVDSADRDRIGISKDE 469
+ F V+ +T + K +WD GQ R YY +I V D+ R+ D+
Sbjct: 43 VDFKVKTLTVEGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDTNSRETF----DK 98
Query: 470 LVHMLREEEL 499
L L E E+
Sbjct: 99 LEEWLNEVEM 108
>SB_50855| Best HMM Match : Ras (HMM E-Value=0)
Length = 733
Score = 32.3 bits (70), Expect = 0.39
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = +2
Query: 332 LKFQVWDLGGQTSIRPYWRCYYGNTDAIIYVVDSADRDRIGISKDELVHMLRE 490
+KF++WD GQ YY A I V D ++D +K + + R+
Sbjct: 70 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQDTFARAKTWVKELQRQ 122
>SB_33743| Best HMM Match : Ras (HMM E-Value=2e-34)
Length = 241
Score = 30.7 bits (66), Expect = 1.2
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +2
Query: 326 KNLKFQVWDLGGQTSIRPYWRCYYGNTDAIIYVVD 430
+++K Q+WD GQ R + YY + + +I D
Sbjct: 93 QDVKLQIWDTAGQERFRTITQSYYRSCNGVIIAYD 127
>SB_13045| Best HMM Match : Ras (HMM E-Value=0)
Length = 629
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/39 (38%), Positives = 17/39 (43%)
Frame = +2
Query: 314 QVTYKNLKFQVWDLGGQTSIRPYWRCYYGNTDAIIYVVD 430
QV K +K QVWD GQ R YY + V D
Sbjct: 55 QVEGKIIKAQVWDTAGQERYRAITSAYYRGAVGAVLVYD 93
>SB_33745| Best HMM Match : Ras (HMM E-Value=2.5e-21)
Length = 115
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Frame = +2
Query: 296 IGFNVEQV--TYKNLKFQVWDLGGQTSIRPYWRCYYGNTDAIIYVVDSADRDRIGISKD 466
I F V+ V K +K Q+WD GQ R YY I + D + + +D
Sbjct: 56 IDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFQAVQD 114
>SB_50523| Best HMM Match : Ras (HMM E-Value=0)
Length = 154
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/35 (34%), Positives = 15/35 (42%)
Frame = +2
Query: 326 KNLKFQVWDLGGQTSIRPYWRCYYGNTDAIIYVVD 430
K +K Q+WD GQ YY I+ V D
Sbjct: 3 KKIKLQIWDTAGQERFHTITTAYYRGAMGIMLVYD 37
>SB_19345| Best HMM Match : Arf (HMM E-Value=3.3e-05)
Length = 222
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +2
Query: 401 NTDAIIYVVD-SADRDRIGISKDELVHMLREEE 496
N DA IYVVD SA+ R+ I EL M+ +
Sbjct: 126 NVDAFIYVVDSSAESQRVNIGDKELQAMMNNSK 158
>SB_39864| Best HMM Match : Ras (HMM E-Value=1.6e-30)
Length = 421
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = +2
Query: 317 VTYKNLKFQVWDLGGQTSIRPYWRCYYGNTDAIIYVVD 430
V K KF +WD GQ + YY + A I V D
Sbjct: 4 VNDKAYKFNIWDTAGQERFKSLAPLYYRDAAAAILVYD 41
>SB_28309| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/53 (28%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Frame = -1
Query: 614 WEXSI--AQGVXSPRAWVYLG-YVRHPAMS-CLLAKTTSXRSLILLPLTYAQV 468
W +I ++G+ P+AWV +G + P +S L++ + S ++ P+TY ++
Sbjct: 350 WSLTIHKSEGITLPKAWVDIGKSEKTPGISYAALSRVKALSSCVIEPMTYQRL 402
>SB_34767| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 216
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
Frame = +2
Query: 290 PTIGFNVEQVTYK-----NLKFQVWDLGGQTSIRPYWRCYYGNTDAIIYVVD 430
PTIG + T + ++ Q+W + GQ R YY DA + + D
Sbjct: 49 PTIGVDFALKTIQWAQNTTIRLQIWLIAGQERFSSMTRVYYKGADACVVLFD 100
>SB_40811| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 522
Score = 27.9 bits (59), Expect = 8.4
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +2
Query: 185 IAGCKGNADFDTWIGRCRKDDNSYKLQVGEVVTTIPTIGFNVEQVT-YKNLKFQVWDLG 358
+A + N D C K Y++Q G V IPT+ + V Y+NL+ DLG
Sbjct: 268 LAAERMNVQKDMLSDYCNKTATKYRIQTGLVPKLIPTLKDKEKYVLHYRNLQLYT-DLG 325
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,611,839
Number of Sequences: 59808
Number of extensions: 446588
Number of successful extensions: 1039
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1035
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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