Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30921.Seq
         (698 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003389-6|AAV58872.1|  222|Caenorhabditis elegans Hypothetical ...    86   2e-17
AF003389-5|AAC71137.1|  246|Caenorhabditis elegans Hypothetical ...    86   2e-17
U80446-3|AAL77180.1|  889|Caenorhabditis elegans Nuclear pore co...    30   1.8  
U80446-2|AAB37803.1| 1562|Caenorhabditis elegans Nuclear pore co...    30   1.8  
Z83119-5|CAB05582.3| 1364|Caenorhabditis elegans Hypothetical pr...    27   9.8  
AF047657-9|AAK18945.1|  329|Caenorhabditis elegans Seven tm rece...    27   9.8  

>AF003389-6|AAV58872.1|  222|Caenorhabditis elegans Hypothetical
           protein F23H11.9b protein.
          Length = 222

 Score = 86.2 bits (204), Expect = 2e-17
 Identities = 39/85 (45%), Positives = 61/85 (71%)
 Frame = -1

Query: 512 STLFISLTWQDLIPISLTLLIVGRDIALVVAGFVIRYISLPPPRTLSRYFDVTHATAQLA 333
           ST+FI++T+  LIP+ LT +++ RDI L+  GF  RY  + PP +LSR+F+   ++ Q+ 
Sbjct: 101 STMFITMTYAGLIPLPLTSVVILRDICLIGGGFYKRYQVMSPPYSLSRFFNPQVSSMQVV 160

Query: 332 PTFISKVNTAVQLLLVGTTLASPVF 258
           PT +SK+NT +Q+ LV  +L+SPVF
Sbjct: 161 PTMMSKINTVLQITLVALSLSSPVF 185



 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 24/40 (60%), Positives = 31/40 (77%)
 Frame = -2

Query: 628 LLVFAGITDLLDGWIARNWKGQSTKMGSFLDPMADKVLVA 509
           L   AG TDLLDG+IARN  GQ + +GS LDP+ADK+L++
Sbjct: 62  LFTVAGATDLLDGFIARNVPGQKSLLGSVLDPVADKLLIS 101


>AF003389-5|AAC71137.1|  246|Caenorhabditis elegans Hypothetical
           protein F23H11.9a protein.
          Length = 246

 Score = 86.2 bits (204), Expect = 2e-17
 Identities = 39/85 (45%), Positives = 61/85 (71%)
 Frame = -1

Query: 512 STLFISLTWQDLIPISLTLLIVGRDIALVVAGFVIRYISLPPPRTLSRYFDVTHATAQLA 333
           ST+FI++T+  LIP+ LT +++ RDI L+  GF  RY  + PP +LSR+F+   ++ Q+ 
Sbjct: 125 STMFITMTYAGLIPLPLTSVVILRDICLIGGGFYKRYQVMSPPYSLSRFFNPQVSSMQVV 184

Query: 332 PTFISKVNTAVQLLLVGTTLASPVF 258
           PT +SK+NT +Q+ LV  +L+SPVF
Sbjct: 185 PTMMSKINTVLQITLVALSLSSPVF 209



 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 24/40 (60%), Positives = 31/40 (77%)
 Frame = -2

Query: 628 LLVFAGITDLLDGWIARNWKGQSTKMGSFLDPMADKVLVA 509
           L   AG TDLLDG+IARN  GQ + +GS LDP+ADK+L++
Sbjct: 86  LFTVAGATDLLDGFIARNVPGQKSLLGSVLDPVADKLLIS 125


>U80446-3|AAL77180.1|  889|Caenorhabditis elegans Nuclear pore
           complex protein protein6, isoform b protein.
          Length = 889

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = +1

Query: 421 ATTNAISRPTISSVNEIGMRSCQVREIKRVLRELYLPLD 537
           A T   SR    S  ++   SC++REI RV REL   LD
Sbjct: 801 AITEKKSRAGAPSFGDVEALSCELREIIRVYRELNEQLD 839


>U80446-2|AAB37803.1| 1562|Caenorhabditis elegans Nuclear pore
           complex protein protein6, isoform a protein.
          Length = 1562

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = +1

Query: 421 ATTNAISRPTISSVNEIGMRSCQVREIKRVLRELYLPLD 537
           A T   SR    S  ++   SC++REI RV REL   LD
Sbjct: 801 AITEKKSRAGAPSFGDVEALSCELREIIRVYRELNEQLD 839


>Z83119-5|CAB05582.3| 1364|Caenorhabditis elegans Hypothetical
           protein R05H10.6 protein.
          Length = 1364

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +3

Query: 468 NRYEV-LPSERDKESATRTLSAIGSKKEPI 554
           +RY+V LP +  K+S    +SA+G   EP+
Sbjct: 636 SRYDVTLPRQTPKDSVITVVSAVGGNGEPV 665


>AF047657-9|AAK18945.1|  329|Caenorhabditis elegans Seven tm
           receptor protein 39 protein.
          Length = 329

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
 Frame = -1

Query: 485 QDLIPISLTLLIV--GRDIALVVAGFVIRYISLPPPRTLSRYFDVTHATA-QLAPTFISK 315
           +D++ ISL + +      +  +   F  RY+SL  P  L++ F+   A A  + P FI  
Sbjct: 85  KDVVTISLVVYVTIYAVVVTFLAVQFAFRYVSLFNP-DLTKLFENYGAIAWSMYPVFIGS 143

Query: 314 VNTA 303
           VN A
Sbjct: 144 VNGA 147


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,238,928
Number of Sequences: 27780
Number of extensions: 339124
Number of successful extensions: 790
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)