Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30921.Seq
         (698 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   3.7  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    23   3.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   3.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.4  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   8.5  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -2

Query: 628 LLVFAGITDLLDGWI 584
           ++ FAG+ DLL  W+
Sbjct: 78  VMTFAGVNDLLGYWV 92


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 237 LKVLCGITAASTIVSAVSYLVSKDT 163
           +  L  I+A+  I  A S LVSKD+
Sbjct: 242 INTLLSISASCVIAFATSALVSKDS 266


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 591 PSSKSVIPANTNSPQCQVVIILGLLP 668
           P S   +P NTNS     + IL ++P
Sbjct: 767 PPSAQNVPQNTNSQAIPRIPILPMIP 792


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +2

Query: 629  PPVPGCNYS 655
            PPVPG NY+
Sbjct: 1654 PPVPGSNYN 1662


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/42 (23%), Positives = 19/42 (45%)
 Frame = -2

Query: 646 TTWHWGLLVFAGITDLLDGWIARNWKGQSTKMGSFLDPMADK 521
           T + W   + AG + + +  + +NW    T   S L+   +K
Sbjct: 414 TPFQWDNSINAGFSKIAENLLEKNWLPVHTSYKSGLNLEQEK 455


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,723
Number of Sequences: 438
Number of extensions: 4811
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)