Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30917.Seq
         (698 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1772 + 29411874-29413218,29413355-29413421,29413749-294138...    30   2.0  
11_01_0190 + 1503018-1503125,1503435-1503521,1504126-1504225,150...    28   6.2  

>07_03_1772 +
           29411874-29413218,29413355-29413421,29413749-29413896,
           29415293-29415416,29416340-29416590,29416923-29418449,
           29418786-29418896,29419576-29419734,29419827-29421734
          Length = 1879

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/53 (30%), Positives = 29/53 (54%)
 Frame = +1

Query: 349 QKQVAICNYVCN*VVFLSIDNIGKHS*LHITQTIKTSSSSACISPLLDVNLSH 507
           +K V   N+    VV   +D + +H+ +  TQ  +  SSS+  SPLL + +++
Sbjct: 500 EKPVTTRNHAYAEVVVFVLDQMTRHTQVTSTQRKQARSSSSSASPLLSLRITY 552


>11_01_0190 +
           1503018-1503125,1503435-1503521,1504126-1504225,
           1504282-1504283,1504868-1504921,1505532-1505675,
           1506643-1507026
          Length = 292

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -3

Query: 588 ISGPDDLWQYAGKNWMR-KVEDRFIVADMGEVYIQQWRDTG*R*RCFN 448
           + G ++ +++A + W R +V  +F   D+  +YI    D G + +CFN
Sbjct: 81  VLGGNNSFKFAEQAWHRSEVYPQFFGDDLPRLYIYSTNDGGVKLKCFN 128


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,581,973
Number of Sequences: 37544
Number of extensions: 342184
Number of successful extensions: 780
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)