Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30917.Seq
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44105| Best HMM Match : 7TMR-DISM_7TM (HMM E-Value=0.42)            29   2.7  
SB_53416| Best HMM Match : Acetyltransf_1 (HMM E-Value=2.7e-21)        29   4.8  
SB_51927| Best HMM Match : Acetyltransf_1 (HMM E-Value=2.7e-21)        29   4.8  
SB_55294| Best HMM Match : Paxillin (HMM E-Value=5.5)                  28   6.3  

>SB_44105| Best HMM Match : 7TMR-DISM_7TM (HMM E-Value=0.42)
          Length = 326

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +3

Query: 612 LKFLLEIGMSNYFNLDDWNS 671
           L FLL   +S+YFN D+WNS
Sbjct: 141 LTFLLANRLSSYFNSDNWNS 160


>SB_53416| Best HMM Match : Acetyltransf_1 (HMM E-Value=2.7e-21)
          Length = 209

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 18/67 (26%), Positives = 35/67 (52%)
 Frame = +1

Query: 4   PKLSLCGLVLSVWGIIQLTLMGVFYYIRAVALLEDLPFDEKNXPHSIEDFVIEVEKGYTL 183
           P L L  LV +V  +  L L+G+   + AV +   L F + +  H++E  + ++ K Y++
Sbjct: 43  PALFLTRLVAAVTSV-WLALIGLGLIVSAVYISYYLKFMQ-HINHALETDLADISKSYSV 100

Query: 184 NAQNCWI 204
              + W+
Sbjct: 101 EKSSFWV 107


>SB_51927| Best HMM Match : Acetyltransf_1 (HMM E-Value=2.7e-21)
          Length = 238

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 18/67 (26%), Positives = 35/67 (52%)
 Frame = +1

Query: 4   PKLSLCGLVLSVWGIIQLTLMGVFYYIRAVALLEDLPFDEKNXPHSIEDFVIEVEKGYTL 183
           P L L  LV +V  +  L L+G+   + AV +   L F + +  H++E  + ++ K Y++
Sbjct: 72  PALFLTRLVAAVTSV-WLALIGLGLIVSAVYISYYLKFMQ-HINHALETDLADISKSYSV 129

Query: 184 NAQNCWI 204
              + W+
Sbjct: 130 EKSSFWV 136


>SB_55294| Best HMM Match : Paxillin (HMM E-Value=5.5)
          Length = 161

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = +3

Query: 525 DPLPFASNFFQHIATSHQA--HLFKQNF 602
           DPLP   ++FQHI T   A  H   QNF
Sbjct: 53  DPLPTGGSYFQHITTETGAKVHTEYQNF 80


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,681,939
Number of Sequences: 59808
Number of extensions: 403169
Number of successful extensions: 816
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)