Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30917.Seq
         (698 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF990671-1|ABS30732.1| 1256|Anopheles gambiae voltage-gated calc...    24   4.0  
AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcript...    24   4.0  
AJ439060-18|CAD27769.1|  257|Anopheles gambiae hypothetical prot...    24   5.3  
AF364132-1|AAL35508.1|  397|Anopheles gambiae putative odorant r...    23   7.0  

>EF990671-1|ABS30732.1| 1256|Anopheles gambiae voltage-gated calcium
           channel alpha2-delta subunit 1 protein.
          Length = 1256

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 252 KLMSRYNQCNQVQQCRNPTILCIQGIS 172
           +L+ +YNQ +Q  QC    +L   G S
Sbjct: 360 ELLRKYNQSSQGSQCNQAIMLITDGPS 386


>AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1009

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = +1

Query: 430  LHITQTIKTSSSSACISPL-LDVNLSH-IRHNETILYLSHPIFSSILPQVI 576
            LH  Q   +    AC  P   +  + H +RH E I+ L H +   + P+ I
Sbjct: 903  LHRMQLTGSPLCDACEEPEDAEHTIFHCVRHRELIIRLQHQVDEELTPENI 953


>AJ439060-18|CAD27769.1|  257|Anopheles gambiae hypothetical protein
           protein.
          Length = 257

 Score = 23.8 bits (49), Expect = 5.3
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -1

Query: 371 LHIATCFWQKKKQFYNGMELTAKITTPSILHTN 273
           L +   F Q+ KQF N     AK  +P   H+N
Sbjct: 144 LRLKHTFAQEAKQFCNAEIRAAKADSPENCHSN 176


>AF364132-1|AAL35508.1|  397|Anopheles gambiae putative odorant
           receptor Or4 protein.
          Length = 397

 Score = 23.4 bits (48), Expect = 7.0
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 358 VAICNYVCN*VVFLSIDNIGKHS*LHITQTIK 453
           V +C YVCN  V     +IG H  L+   TI+
Sbjct: 197 VVMCGYVCNLKVMTICCSIG-HCTLYTRMTIE 227


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 730,993
Number of Sequences: 2352
Number of extensions: 14831
Number of successful extensions: 17
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 71086350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)