Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30917.Seq
         (698 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC062705-1|AAH62705.1|   98|Homo sapiens similar to DNA segment,...    73   1e-12
BC051802-1|AAH51802.1|   98|Homo sapiens similar to DNA segment,...    73   1e-12
BC095436-1|AAH95436.1|  108|Homo sapiens MGC71993 protein protein.     41   0.004
Y08110-1|CAA69325.1| 2214|Homo sapiens mosaic protein LR11 protein.    30   9.1  
U60975-1|AAC50891.2| 2214|Homo sapiens gp250 precursor protein.        30   9.1  

>BC062705-1|AAH62705.1|   98|Homo sapiens similar to DNA segment,
           Chr 11, Brigham & Womens Genetics 0434 expressed
           protein.
          Length = 98

 Score = 72.5 bits (170), Expect = 1e-12
 Identities = 34/85 (40%), Positives = 54/85 (63%)
 Frame = +1

Query: 1   GPKLSLCGLVLSVWGIIQLTLMGVFYYIRAVALLEDLPFDEKNXPHSIEDFVIEVEKGYT 180
           GPKL+ CG+VLS WG+I L ++G+F+ + +  L+ED+PF EK+  +  ++    +   Y 
Sbjct: 8   GPKLAACGIVLSAWGVIMLIMLGIFFNVHSAVLIEDVPFTEKDFENGPQN----IYNLYE 63

Query: 181 LNAQNCWIAALLYLITLVVSGHQFC 255
             + NC+IAA LYL+   + G  FC
Sbjct: 64  QVSYNCFIAAGLYLL---LGGFSFC 85


>BC051802-1|AAH51802.1|   98|Homo sapiens similar to DNA segment,
           Chr 11, Brigham & Womens Genetics 0434 expressed
           protein.
          Length = 98

 Score = 72.5 bits (170), Expect = 1e-12
 Identities = 34/85 (40%), Positives = 54/85 (63%)
 Frame = +1

Query: 1   GPKLSLCGLVLSVWGIIQLTLMGVFYYIRAVALLEDLPFDEKNXPHSIEDFVIEVEKGYT 180
           GPKL+ CG+VLS WG+I L ++G+F+ + +  L+ED+PF EK+  +  ++    +   Y 
Sbjct: 8   GPKLAACGIVLSAWGVIMLIMLGIFFNVHSAVLIEDVPFTEKDFENGPQN----IYNLYE 63

Query: 181 LNAQNCWIAALLYLITLVVSGHQFC 255
             + NC+IAA LYL+   + G  FC
Sbjct: 64  QVSYNCFIAAGLYLL---LGGFSFC 85


>BC095436-1|AAH95436.1|  108|Homo sapiens MGC71993 protein protein.
          Length = 108

 Score = 41.1 bits (92), Expect = 0.004
 Identities = 21/65 (32%), Positives = 38/65 (58%)
 Frame = +1

Query: 61  LMGVFYYIRAVALLEDLPFDEKNXPHSIEDFVIEVEKGYTLNAQNCWIAALLYLITLVVS 240
           ++G+F+ + +  L+ED+PF EK+  +  ++    +   Y   + NC+IAA LYL+   + 
Sbjct: 38  MLGIFFNVHSAVLIEDVPFTEKDFENGPQN----IYNLYEQVSYNCFIAAGLYLL---LG 90

Query: 241 GHQFC 255
           G  FC
Sbjct: 91  GFSFC 95


>Y08110-1|CAA69325.1| 2214|Homo sapiens mosaic protein LR11 protein.
          Length = 2214

 Score = 29.9 bits (64), Expect = 9.1
 Identities = 18/71 (25%), Positives = 30/71 (42%)
 Frame = +1

Query: 331  NCFFFCQKQVAICNYVCN*VVFLSIDNIGKHS*LHITQTIKTSSSSACISPLLDVNLSHI 510
            N  F  Q +    N +C     L  D +G  +    TQ  +++  +A + P+L + L  +
Sbjct: 2092 NYTFTVQARCLFGNQICGEPAILLYDELGSGADASATQAARSTDVAAVVVPILFLILLSL 2151

Query: 511  RHNETILYLSH 543
                 ILY  H
Sbjct: 2152 GVGFAILYTKH 2162


>U60975-1|AAC50891.2| 2214|Homo sapiens gp250 precursor protein.
          Length = 2214

 Score = 29.9 bits (64), Expect = 9.1
 Identities = 18/71 (25%), Positives = 30/71 (42%)
 Frame = +1

Query: 331  NCFFFCQKQVAICNYVCN*VVFLSIDNIGKHS*LHITQTIKTSSSSACISPLLDVNLSHI 510
            N  F  Q +    N +C     L  D +G  +    TQ  +++  +A + P+L + L  +
Sbjct: 2092 NYTFTVQARCLFGNQICGEPAILLYDELGSGADASATQAARSTDVAAVVVPILFLILLSL 2151

Query: 511  RHNETILYLSH 543
                 ILY  H
Sbjct: 2152 GVGFAILYTKH 2162


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,871,987
Number of Sequences: 237096
Number of extensions: 1971034
Number of successful extensions: 3522
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3519
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8063224416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)