Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30917.Seq
         (698 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g39410.1 68417.m05578 WRKY family transcription factor identi...    30   1.3  
At3g55840.1 68416.m06204 expressed protein                             28   5.2  
At2g46020.2 68415.m05725 transcription regulatory protein SNF2, ...    28   5.2  
At2g46020.1 68415.m05724 transcription regulatory protein SNF2, ...    28   5.2  
At2g29940.1 68415.m03642 ABC transporter family protein similar ...    28   5.2  
At3g28410.1 68416.m03549 F-box family protein low similarity to ...    27   9.0  

>At4g39410.1 68417.m05578 WRKY family transcription factor identical
           to WRKY transcription factor 13 GI:15991729 from
           [Arabidopsis thaliana]
          Length = 304

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +1

Query: 421 HS*LHITQTIKTSSSSACISPLLDVN-LSHIRHNETILYLSHP 546
           HS L  + +  +SS S+ +SP L  N L+   HN    ++SHP
Sbjct: 35  HSTLSSSSSSSSSSPSSLVSPFLGHNSLNSFLHNNPSSFISHP 77


>At3g55840.1 68416.m06204 expressed protein
          Length = 428

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 18/58 (31%), Positives = 31/58 (53%)
 Frame = +1

Query: 436 ITQTIKTSSSSACISPLLDVNLSHIRHNETILYLSHPIFSSILPQVIRPTYLNKTFKL 609
           ++  I +SSS+AC +  L + L  +R+  + LY  H I   +L   ++   L  TF+L
Sbjct: 28  VSSPISSSSSAACSAYELYLRLPELRNLWSSLYFPHWISEPVLKPALQA--LEITFRL 83


>At2g46020.2 68415.m05725 transcription regulatory protein SNF2,
            putative similar to SP|P22082 Transcription regulatory
            protein SNF2 (SWI/SNF complex component SNF2)
            {Saccharomyces cerevisiae}; contains Pfam profiles
            PF00271: Helicase conserved C-terminal domain, PF00176:
            SNF2 family N-terminal domain
          Length = 2193

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +1

Query: 37   VWGIIQLTLMGVFYYIRAVALLEDLPFDEKNXPHSIEDFVIEVEK 171
            +W ++ L L  VF   +A       PF ++   H+IED  +E EK
Sbjct: 1148 LWSLLNLLLPDVFDNRKAFHDWFAQPFQKEGPAHNIEDDWLETEK 1192


>At2g46020.1 68415.m05724 transcription regulatory protein SNF2,
            putative similar to SP|P22082 Transcription regulatory
            protein SNF2 (SWI/SNF complex component SNF2)
            {Saccharomyces cerevisiae}; contains Pfam profiles
            PF00271: Helicase conserved C-terminal domain, PF00176:
            SNF2 family N-terminal domain
          Length = 2192

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +1

Query: 37   VWGIIQLTLMGVFYYIRAVALLEDLPFDEKNXPHSIEDFVIEVEK 171
            +W ++ L L  VF   +A       PF ++   H+IED  +E EK
Sbjct: 1147 LWSLLNLLLPDVFDNRKAFHDWFAQPFQKEGPAHNIEDDWLETEK 1191


>At2g29940.1 68415.m03642 ABC transporter family protein similar to
            ABC1 protein GI:14331118 from [Nicotiana plumbaginifolia]
          Length = 1426

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 486  AGCKPLPYPPQ*NDPLPFASNFFQHIATSHQAHLFKQN 599
            A  K L  PP+ ++P+ F S + Q+  +     L+KQN
Sbjct: 1124 ANIKQLSVPPEGSEPISFTSRYSQNQLSQFLLCLWKQN 1161


>At3g28410.1 68416.m03549 F-box family protein low similarity to
           ribosomal RNA apurinic site specific lyase [Triticum
           aestivum] GI:6505722; contains F-box domain Pfam:PF00646
          Length = 465

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 472 CISPLLDVNLSHIRHNETILYLSHPIFSS 558
           C +P LD+ L H   N+T+   + PI +S
Sbjct: 65  CETPCLDIKLKHGETNQTLTSYTAPIITS 93


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,742,721
Number of Sequences: 28952
Number of extensions: 293885
Number of successful extensions: 678
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)