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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30916.Seq
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19611| Best HMM Match : No HMM Matches (HMM E-Value=.)             173   7e-44
SB_1026| Best HMM Match : PDZ (HMM E-Value=9.7e-08)                    33   0.13 
SB_18760| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.23 
SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.53 
SB_20269| Best HMM Match : SOCS_box (HMM E-Value=4.6e-05)              29   2.9  
SB_3212| Best HMM Match : APC10 (HMM E-Value=0.36)                     27   8.7  
SB_50521| Best HMM Match : MFS_1 (HMM E-Value=0.0026)                  27   8.7  

>SB_19611| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 166

 Score =  173 bits (422), Expect = 7e-44
 Identities = 81/114 (71%), Positives = 99/114 (86%)
 Frame = +3

Query: 252 KDWKGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVI 431
           +DWKGLKITV LT+QNRQA+++VVPSA++LII+ALKEPPRDRKK KNIKHNGNI+L+DV 
Sbjct: 51  QDWKGLKITVCLTIQNRQAKVSVVPSASSLIIKALKEPPRDRKKVKNIKHNGNITLDDVT 110

Query: 432 GIAKIMRNRSMARYLSGSVKEILGHRQSVGCTVEGRPPHDLIXDINSXXXTIDE 593
            +AK+MR RSMAR+LSG+VKEILG  QSVGCTV+G  PHD+I  INS    I++
Sbjct: 111 NVAKVMRPRSMARHLSGTVKEILGTCQSVGCTVDGMAPHDVIDKINSGEIEIED 164



 Score = 99.1 bits (236), Expect = 2e-21
 Identities = 45/51 (88%), Positives = 48/51 (94%)
 Frame = +1

Query: 103 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATR 255
           MPPKFDPNEI+ V LRC GGEVGAT+SLAPKIGPLGLSPKKVGDDIAKAT+
Sbjct: 1   MPPKFDPNEIQYVYLRCTGGEVGATASLAPKIGPLGLSPKKVGDDIAKATQ 51


>SB_1026| Best HMM Match : PDZ (HMM E-Value=9.7e-08)
          Length = 924

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
 Frame = +3

Query: 249 HKDWKGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLED- 425
           H DWK L   +++++ + QA   V+P    + +R   E    +++ +   H   +  ED 
Sbjct: 606 HSDWKSLGNYLRISLPSNQA--TVIPLGHDMTVREAVESTCQKRQLEPRAHYLRLGKEDN 663

Query: 426 --VIGIAKIMRNRSMARYLSGSVKEILGHRQSV 518
             VIGI+   RN ++  Y+S   +  L H Q V
Sbjct: 664 NGVIGISVTCRNDAL--YISQVEEGRLAHVQGV 694


>SB_18760| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1569

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
 Frame = -3

Query: 377 TVTRRLLKGSDDKGCC-----RGNNSYLGLSVLNCQLHSDLETLPVLVALAMSSPTFLGD 213
           +++  +  GSD+K CC      G  + LG+  +   +HSD++  P+L  LA     F+ +
Sbjct: 108 SLSSSMFTGSDNKLCCFFLGQDGEKAMLGIVYVLTHVHSDIQFCPLLPVLAALFLHFMDE 167

Query: 212 R 210
           R
Sbjct: 168 R 168


>SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4554

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 23/61 (37%), Positives = 28/61 (45%)
 Frame = -3

Query: 350  SDDKGCCRGNNSYLGLSVLNCQLHSDLETLPVLVALAMSSPTFLGDRPRGPILGAKDDVA 171
            SD+K C R       LS L      ++ TL  L      S TF   +P GP+ G K DVA
Sbjct: 924  SDEKRCIRAF-----LSSLRNPSDDEVLTLMALPIFEAISGTFTAVQPDGPLRGEKLDVA 978

Query: 170  P 168
            P
Sbjct: 979  P 979


>SB_20269| Best HMM Match : SOCS_box (HMM E-Value=4.6e-05)
          Length = 302

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +3

Query: 270 KITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKH 401
           ++ ++     RQ +   +PSA    IR  +E PR  +K  N+KH
Sbjct: 97  RVIIRAVGSRRQVEPLPLPSALKEWIREYEEEPRFDRKLTNLKH 140


>SB_3212| Best HMM Match : APC10 (HMM E-Value=0.36)
          Length = 646

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +1

Query: 121 PNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVG 231
           P+     +L+C G E   TSS+ P +G LG   K  G
Sbjct: 597 PSMTNTTSLKCQGDEKSGTSSITP-LGSLGTYDKSHG 632


>SB_50521| Best HMM Match : MFS_1 (HMM E-Value=0.0026)
          Length = 1080

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +2

Query: 380 KAEKYQTQRQHLP*RCNRHCEDHEKQINGPVPFWLSKRDSWAQT 511
           + E+  T+    P RC R  ++HE   + P+P+ LS R+  + T
Sbjct: 393 RCERDSTEHDDSP-RCVRDSKEHEADTSSPLPY-LSLREKLSTT 434


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,228,464
Number of Sequences: 59808
Number of extensions: 394779
Number of successful extensions: 880
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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