BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= psV30916.Seq (598 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_19611| Best HMM Match : No HMM Matches (HMM E-Value=.) 173 7e-44 SB_1026| Best HMM Match : PDZ (HMM E-Value=9.7e-08) 33 0.13 SB_18760| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.23 SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.53 SB_20269| Best HMM Match : SOCS_box (HMM E-Value=4.6e-05) 29 2.9 SB_3212| Best HMM Match : APC10 (HMM E-Value=0.36) 27 8.7 SB_50521| Best HMM Match : MFS_1 (HMM E-Value=0.0026) 27 8.7 >SB_19611| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 166 Score = 173 bits (422), Expect = 7e-44 Identities = 81/114 (71%), Positives = 99/114 (86%) Frame = +3 Query: 252 KDWKGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVI 431 +DWKGLKITV LT+QNRQA+++VVPSA++LII+ALKEPPRDRKK KNIKHNGNI+L+DV Sbjct: 51 QDWKGLKITVCLTIQNRQAKVSVVPSASSLIIKALKEPPRDRKKVKNIKHNGNITLDDVT 110 Query: 432 GIAKIMRNRSMARYLSGSVKEILGHRQSVGCTVEGRPPHDLIXDINSXXXTIDE 593 +AK+MR RSMAR+LSG+VKEILG QSVGCTV+G PHD+I INS I++ Sbjct: 111 NVAKVMRPRSMARHLSGTVKEILGTCQSVGCTVDGMAPHDVIDKINSGEIEIED 164 Score = 99.1 bits (236), Expect = 2e-21 Identities = 45/51 (88%), Positives = 48/51 (94%) Frame = +1 Query: 103 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATR 255 MPPKFDPNEI+ V LRC GGEVGAT+SLAPKIGPLGLSPKKVGDDIAKAT+ Sbjct: 1 MPPKFDPNEIQYVYLRCTGGEVGATASLAPKIGPLGLSPKKVGDDIAKATQ 51 >SB_1026| Best HMM Match : PDZ (HMM E-Value=9.7e-08) Length = 924 Score = 33.5 bits (73), Expect = 0.13 Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 3/93 (3%) Frame = +3 Query: 249 HKDWKGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLED- 425 H DWK L +++++ + QA V+P + +R E +++ + H + ED Sbjct: 606 HSDWKSLGNYLRISLPSNQA--TVIPLGHDMTVREAVESTCQKRQLEPRAHYLRLGKEDN 663 Query: 426 --VIGIAKIMRNRSMARYLSGSVKEILGHRQSV 518 VIGI+ RN ++ Y+S + L H Q V Sbjct: 664 NGVIGISVTCRNDAL--YISQVEEGRLAHVQGV 694 >SB_18760| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1569 Score = 32.7 bits (71), Expect = 0.23 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 5/61 (8%) Frame = -3 Query: 377 TVTRRLLKGSDDKGCC-----RGNNSYLGLSVLNCQLHSDLETLPVLVALAMSSPTFLGD 213 +++ + GSD+K CC G + LG+ + +HSD++ P+L LA F+ + Sbjct: 108 SLSSSMFTGSDNKLCCFFLGQDGEKAMLGIVYVLTHVHSDIQFCPLLPVLAALFLHFMDE 167 Query: 212 R 210 R Sbjct: 168 R 168 >SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 4554 Score = 31.5 bits (68), Expect = 0.53 Identities = 23/61 (37%), Positives = 28/61 (45%) Frame = -3 Query: 350 SDDKGCCRGNNSYLGLSVLNCQLHSDLETLPVLVALAMSSPTFLGDRPRGPILGAKDDVA 171 SD+K C R LS L ++ TL L S TF +P GP+ G K DVA Sbjct: 924 SDEKRCIRAF-----LSSLRNPSDDEVLTLMALPIFEAISGTFTAVQPDGPLRGEKLDVA 978 Query: 170 P 168 P Sbjct: 979 P 979 >SB_20269| Best HMM Match : SOCS_box (HMM E-Value=4.6e-05) Length = 302 Score = 29.1 bits (62), Expect = 2.9 Identities = 14/44 (31%), Positives = 23/44 (52%) Frame = +3 Query: 270 KITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKH 401 ++ ++ RQ + +PSA IR +E PR +K N+KH Sbjct: 97 RVIIRAVGSRRQVEPLPLPSALKEWIREYEEEPRFDRKLTNLKH 140 >SB_3212| Best HMM Match : APC10 (HMM E-Value=0.36) Length = 646 Score = 27.5 bits (58), Expect = 8.7 Identities = 14/37 (37%), Positives = 19/37 (51%) Frame = +1 Query: 121 PNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVG 231 P+ +L+C G E TSS+ P +G LG K G Sbjct: 597 PSMTNTTSLKCQGDEKSGTSSITP-LGSLGTYDKSHG 632 >SB_50521| Best HMM Match : MFS_1 (HMM E-Value=0.0026) Length = 1080 Score = 27.5 bits (58), Expect = 8.7 Identities = 14/44 (31%), Positives = 24/44 (54%) Frame = +2 Query: 380 KAEKYQTQRQHLP*RCNRHCEDHEKQINGPVPFWLSKRDSWAQT 511 + E+ T+ P RC R ++HE + P+P+ LS R+ + T Sbjct: 393 RCERDSTEHDDSP-RCVRDSKEHEADTSSPLPY-LSLREKLSTT 434 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 19,228,464 Number of Sequences: 59808 Number of extensions: 394779 Number of successful extensions: 880 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 852 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 880 length of database: 16,821,457 effective HSP length: 79 effective length of database: 12,096,625 effective search space used: 1439498375 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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