Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30916.Seq
(598 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60670.1 68418.m07614 60S ribosomal protein L12 (RPL12C) 60S ... 162 1e-40
At3g53430.1 68416.m05896 60S ribosomal protein L12 (RPL12B) 60S ... 155 2e-38
At2g37190.1 68415.m04562 60S ribosomal protein L12 (RPL12A) 155 3e-38
At3g47110.1 68416.m05115 leucine-rich repeat transmembrane prote... 32 0.33
At2g31890.1 68415.m03896 expressed protein 28 4.1
At1g15500.1 68414.m01865 chloroplast ADP, ATP carrier protein, p... 28 4.1
At1g51450.1 68414.m05791 SPla/RYanodine receptor (SPRY) domain-c... 28 5.4
At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA ... 27 7.2
At5g62170.1 68418.m07804 expressed protein various predicted pro... 27 9.5
At2g37410.2 68415.m04588 mitochondrial import inner membrane tra... 27 9.5
At2g37410.1 68415.m04587 mitochondrial import inner membrane tra... 27 9.5
>At5g60670.1 68418.m07614 60S ribosomal protein L12 (RPL12C) 60S
RIBOSOMAL PROTEIN L12 (like), Arabidopsis thaliana,
PIR:T45883
Length = 166
Score = 162 bits (394), Expect = 1e-40
Identities = 78/107 (72%), Positives = 93/107 (86%)
Frame = +3
Query: 252 KDWKGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVI 431
K+WKGL++TV+LTVQNRQA++ VVPSAAAL+I+ALKEP RDRKK KNIKHNGNIS +DVI
Sbjct: 52 KEWKGLRVTVKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVI 111
Query: 432 GIAKIMRNRSMARYLSGSVKEILGHRQSVGCTVEGRPPHDLIXDINS 572
IAKIMR RS+A+ LSG+VKEILG SVGCTV+G+ P DL +INS
Sbjct: 112 EIAKIMRPRSIAKELSGTVKEILGTCVSVGCTVDGKDPKDLQEEINS 158
Score = 79.8 bits (188), Expect = 1e-15
Identities = 36/50 (72%), Positives = 42/50 (84%)
Frame = +1
Query: 103 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKAT 252
MPPK DP++I V +R GGEVGA SSLAPKIGPLGL+PKK+G+DIAK T
Sbjct: 1 MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKET 50
>At3g53430.1 68416.m05896 60S ribosomal protein L12 (RPL12B) 60S
RIBOSOMAL PROTEIN L12, Prunus armeniaca,
SWISSPROT:RL12_PRUAR
Length = 166
Score = 155 bits (377), Expect = 2e-38
Identities = 75/114 (65%), Positives = 92/114 (80%)
Frame = +3
Query: 252 KDWKGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVI 431
K+WKGL++TV+LTVQNRQA++ VVPSAAAL+I+ALKEP RDRKK KNIKHNGNIS +DV
Sbjct: 52 KEWKGLRVTVKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVT 111
Query: 432 GIAKIMRNRSMARYLSGSVKEILGHRQSVGCTVEGRPPHDLIXDINSXXXTIDE 593
IA+IMR RS+A+ LSG+V+EILG SVGCTV+G+ P DL +I I E
Sbjct: 112 EIARIMRPRSIAKELSGTVREILGTCVSVGCTVDGKDPKDLQQEIQEGEIEIPE 165
Score = 79.8 bits (188), Expect = 1e-15
Identities = 36/50 (72%), Positives = 42/50 (84%)
Frame = +1
Query: 103 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKAT 252
MPPK DP++I V +R GGEVGA SSLAPKIGPLGL+PKK+G+DIAK T
Sbjct: 1 MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKET 50
>At2g37190.1 68415.m04562 60S ribosomal protein L12 (RPL12A)
Length = 166
Score = 155 bits (375), Expect = 3e-38
Identities = 74/114 (64%), Positives = 92/114 (80%)
Frame = +3
Query: 252 KDWKGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVI 431
K+WKGL++TV+LTVQNRQA++ VVPSAAAL+I+ALKEP RDRKK KNIKHNGNIS +DV
Sbjct: 52 KEWKGLRVTVKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVT 111
Query: 432 GIAKIMRNRSMARYLSGSVKEILGHRQSVGCTVEGRPPHDLIXDINSXXXTIDE 593
IA+IMR RS+A+ LSG+V+EILG SVGCTV+G+ P D+ +I I E
Sbjct: 112 EIARIMRPRSIAKELSGTVREILGTCVSVGCTVDGKDPKDIQQEIQDGEVEIPE 165
Score = 79.8 bits (188), Expect = 1e-15
Identities = 36/50 (72%), Positives = 42/50 (84%)
Frame = +1
Query: 103 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKAT 252
MPPK DP++I V +R GGEVGA SSLAPKIGPLGL+PKK+G+DIAK T
Sbjct: 1 MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKET 50
>At3g47110.1 68416.m05115 leucine-rich repeat transmembrane protein
kinase, putative protein kinase Xa21 receptor type
precursor, Oryza sativa, PIR:A57676
Length = 1025
Score = 31.9 bits (69), Expect = 0.33
Identities = 19/69 (27%), Positives = 35/69 (50%)
Frame = -1
Query: 556 IRSCGGLPSTVHPTDCLCPRISFTEPERYRAIDLFLMIFAMPITSSREMLPLCLIFFCFL 377
I CGG+PS + C S P R+ ++ + I + ++ +L LC+++ C+
Sbjct: 626 INLCGGIPS-LQLQPC-----SVELPRRHSSVRKIITICVSAVMAALLLLCLCVVYLCWY 679
Query: 376 RSRGGSLRA 350
+ R S+RA
Sbjct: 680 KLRVKSVRA 688
>At2g31890.1 68415.m03896 expressed protein
Length = 671
Score = 28.3 bits (60), Expect = 4.1
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +3
Query: 360 EPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNRSMA 467
+PP+ RKKQKN K +LED G+ +R R +A
Sbjct: 112 QPPKKRKKQKNSK-----ALEDTEGMDWCVRARKIA 142
>At1g15500.1 68414.m01865 chloroplast ADP, ATP carrier protein,
putative / ADP, ATP translocase, putative / adenine
nucleotide translocase, putative strong similarity to
SP|Q39002 Chloroplast ADP,ATP carrier protein 1,
chloroplast precursor (ADP/ATP translocase 1) (Adenine
nucleotide translocase 1) {Arabidopsis thaliana};
contains Pfam profile PF03219: TLC ATP/ADP transporter
Length = 618
Score = 28.3 bits (60), Expect = 4.1
Identities = 10/23 (43%), Positives = 18/23 (78%)
Frame = -1
Query: 445 IFAMPITSSREMLPLCLIFFCFL 377
IF + +T+ ++++PL L+FFC L
Sbjct: 102 IFGVEVTTLKKIVPLGLMFFCIL 124
>At1g51450.1 68414.m05791 SPla/RYanodine receptor (SPRY)
domain-containing protein low similarity to DEAD box
protein DDX1 [Gallus gallus] GI:16323037, ryanodine
receptor [Caenorhabditis elegans] GI:1871447; contains
Pfam profile PF00622: SPRY domain
Length = 509
Score = 27.9 bits (59), Expect = 5.4
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = +3
Query: 249 HKDWKGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNI 413
HK K L + V+ + V+PS A ++ A KK K+ K N N+
Sbjct: 172 HKKLKQLDCLTSVAVKEEEEPEQVLPSEAMVVEEAATLVASAAKKSKSKKKNNNV 226
>At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA
Helicase [Arabidopsis thaliana] GI:10944747
Length = 606
Score = 27.5 bits (58), Expect = 7.2
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Frame = +3
Query: 345 IRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIMR-----NRSMARYLSGSVKEILGHR 509
+ +++ P +KK + ++ + + LEDV K+ R +RSM + SV I G +
Sbjct: 111 VHVIEDSPEPKKKPEIVELDSSSDLEDVETRFKVPRRSQTCSRSMDYSMEDSVSTISGRK 170
Query: 510 QSV 518
SV
Sbjct: 171 PSV 173
>At5g62170.1 68418.m07804 expressed protein various predicted
proteins, Arabidopsis thaliana
Length = 703
Score = 27.1 bits (57), Expect = 9.5
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -1
Query: 274 ILRPFQSLWPWQCHHP 227
IL+P +L PW CH+P
Sbjct: 564 ILKPHINLKPWVCHYP 579
>At2g37410.2 68415.m04588 mitochondrial import inner membrane
translocase (TIM17) nearly identical to SP|Q9SP35
Mitochondrial import inner membrane translocase subunit
TIM17 {Arabidopsis thaliana}
Length = 243
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = -1
Query: 367 GGSLRALMIRAAAEGTTAIWACLF*TVSCTVI-LRPFQSLW 248
GG+ M G+ A+W LF T CT++ LR + W
Sbjct: 50 GGTQSVSMNAPRTGGSFAVWGGLFSTFDCTMVYLRQKEDPW 90
>At2g37410.1 68415.m04587 mitochondrial import inner membrane
translocase (TIM17) nearly identical to SP|Q9SP35
Mitochondrial import inner membrane translocase subunit
TIM17 {Arabidopsis thaliana}
Length = 243
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = -1
Query: 367 GGSLRALMIRAAAEGTTAIWACLF*TVSCTVI-LRPFQSLW 248
GG+ M G+ A+W LF T CT++ LR + W
Sbjct: 50 GGTQSVSMNAPRTGGSFAVWGGLFSTFDCTMVYLRQKEDPW 90
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,527,159
Number of Sequences: 28952
Number of extensions: 283571
Number of successful extensions: 746
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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