Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30915.Seq
         (698 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46241-8|CAA86316.2| 1784|Caenorhabditis elegans Hypothetical pr...    29   4.2  
U37430-2|AAL08045.2|  802|Caenorhabditis elegans Hypothetical pr...    29   4.2  
AL032641-4|CAA21647.1|  454|Caenorhabditis elegans Hypothetical ...    28   5.6  
Z82080-8|CAD92382.3|  404|Caenorhabditis elegans Hypothetical pr...    28   7.4  
AL032625-7|CAN86642.1|  404|Caenorhabditis elegans Hypothetical ...    28   7.4  
AL023854-1|CAH60790.2|  404|Caenorhabditis elegans Hypothetical ...    28   7.4  
Z68299-5|CAI46584.1|  111|Caenorhabditis elegans Hypothetical pr...    27   9.8  
AL132862-23|CAB60559.1|  540|Caenorhabditis elegans Hypothetical...    27   9.8  

>Z46241-8|CAA86316.2| 1784|Caenorhabditis elegans Hypothetical
           protein C38D4.3 protein.
          Length = 1784

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
 Frame = -3

Query: 582 NLTLQALVRYINRCIAKQKFQRMISRGEWYPIWESVLIPVPKTL--CCSEVFIEATVKP* 409
           +L +Q++VR +NR     +F   I   EWYP       P P  L  C   V I  ++K  
Sbjct: 705 SLPVQSVVRKMNRQAPNAQFWNDIPHDEWYP-------PTPLDLLECLLNVSISESIKRE 757

Query: 408 PQAMFVISNLSAKED 364
               +VI  +S   +
Sbjct: 758 LVVQYVIDWISTSPE 772


>U37430-2|AAL08045.2|  802|Caenorhabditis elegans Hypothetical
           protein K09F5.6 protein.
          Length = 802

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = +1

Query: 391 NKHSLWLRFHSSLNKNFRAAQSFRYRYQYRFPNWIPFTTRNHPLELLLSYAPIYI 555
           N  S+W    ++L +++     F    +YR  N I + T  +P   L++YA IY+
Sbjct: 11  NLSSIWYTILTTLLQSYLLYLGFE---RYRLYNEIKWPTGGYPYGYLMAYATIYL 62


>AL032641-4|CAA21647.1|  454|Caenorhabditis elegans Hypothetical
           protein Y5F2A.4 protein.
          Length = 454

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +1

Query: 532 LSYAPIYIPYKSLECEIKAVAAGTCSHNNPGPTKKVSIH 648
           +S  P+     SLEC +K +  G CS  NP      ++H
Sbjct: 222 ISDTPVQNSRHSLEC-VKVIICGYCSLKNPDKNHVATVH 259


>Z82080-8|CAD92382.3|  404|Caenorhabditis elegans Hypothetical
           protein W09G3.7a protein.
          Length = 404

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +2

Query: 356 PMRSSFAERFDITNIACGYGFTVASIKTSEQHKVFGTGINTDSQIG 493
           P R ++     I  I+ G+GF++ + K    ++++G GIN   QIG
Sbjct: 57  PKRIAYFNTKSIKFISSGFGFSLFASK----NRLYGAGINNRFQIG 98


>AL032625-7|CAN86642.1|  404|Caenorhabditis elegans Hypothetical
           protein W09G3.7a protein.
          Length = 404

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +2

Query: 356 PMRSSFAERFDITNIACGYGFTVASIKTSEQHKVFGTGINTDSQIG 493
           P R ++     I  I+ G+GF++ + K    ++++G GIN   QIG
Sbjct: 57  PKRIAYFNTKSIKFISSGFGFSLFASK----NRLYGAGINNRFQIG 98


>AL023854-1|CAH60790.2|  404|Caenorhabditis elegans Hypothetical
           protein W09G3.7a protein.
          Length = 404

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +2

Query: 356 PMRSSFAERFDITNIACGYGFTVASIKTSEQHKVFGTGINTDSQIG 493
           P R ++     I  I+ G+GF++ + K    ++++G GIN   QIG
Sbjct: 57  PKRIAYFNTKSIKFISSGFGFSLFASK----NRLYGAGINNRFQIG 98


>Z68299-5|CAI46584.1|  111|Caenorhabditis elegans Hypothetical
          protein T04B2.8 protein.
          Length = 111

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 24 FALNTLDYYRYNLFFDCGMLGNLI 95
          F L  L+ + +NL F CG LG L+
Sbjct: 6  FGLEALNTFYFNLVFLCGFLGYLV 29


>AL132862-23|CAB60559.1|  540|Caenorhabditis elegans Hypothetical
           protein Y73F8A.30 protein.
          Length = 540

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
 Frame = -2

Query: 358 WMPNQFEVVFVTFFPFLATWEVDT---QSTCLSKSPHMTRLSVLLLIGYW 218
           W P  + ++  T  PF A W  DT    S  +++      ++V++   YW
Sbjct: 63  WNPYLYGMINTTILPFDAIWLPDTYLYNSVVMNREETERYINVVVTTNYW 112


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,369,295
Number of Sequences: 27780
Number of extensions: 342393
Number of successful extensions: 983
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 983
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)