Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30912.Seq
(597 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1314 - 25721137-25721538 66 2e-11
10_01_0053 - 767131-767962,768517-769037,769384-769601,769720-76... 29 2.8
09_04_0683 - 19431034-19431495,19431632-19431997,19432055-194323... 29 3.7
05_01_0274 - 2119122-2119775,2121457-2121570,2121895-2122203,212... 28 4.9
09_04_0564 + 18565583-18566449,18569662-18570123 28 6.5
09_02_0093 + 4178852-4179220,4179518-4180113,4180214-4181006 28 6.5
11_01_0185 + 1455635-1455817,1455997-1456051,1456415-1456611,145... 27 8.6
06_03_0138 + 17093196-17093325,17095704-17095804,17096224-170962... 27 8.6
06_01_0229 - 1757998-1758241,1758318-1758388,1758467-1758586,175... 27 8.6
01_05_0005 - 16886553-16886946,16887079-16887404 27 8.6
>07_03_1314 - 25721137-25721538
Length = 133
Score = 66.1 bits (154), Expect = 2e-11
Identities = 34/106 (32%), Positives = 52/106 (49%), Gaps = 8/106 (7%)
Frame = +2
Query: 254 LTGYPLAINATDIKVKEVDFNPEFISRVIPKLDWEVLWVAADSIGHSDGLPR-------- 409
+TGYPL + KE + NPEF+ ++PK+DW L A ++G + LP
Sbjct: 17 VTGYPLKLQVVKWSTKEAEPNPEFLRGMLPKIDWPALVAATQALGLPELLPEAPPTDAEL 76
Query: 410 SLENKYDENEEFLKKAHKXXXXXXXXXGHLTCPNLEDHFPISKGIP 547
S E + L++ H+ G L CP+ + FPIS+G+P
Sbjct: 77 SAEGAAADEGSALRRLHRALLEIHIEEGALVCPDTDRCFPISRGVP 122
>10_01_0053 -
767131-767962,768517-769037,769384-769601,769720-769825,
769958-770017
Length = 578
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = -3
Query: 325 KFRIKIDFFNFNVCRVNCKRIASQTPFKHFEVSILWVISFIIIFVLCNF 179
+ R K FFN+ +N + + T + ++ W ISF+I+ V+ F
Sbjct: 190 ELRRKGSFFNWYTFMINSGSLLASTVLVWLQDNVGWGISFVIVVVVMAF 238
>09_04_0683 -
19431034-19431495,19431632-19431997,19432055-19432326,
19433621-19433686,19433924-19433978,19434509-19434577,
19435200-19435307,19435394-19435462,19435883-19436038,
19436089-19436229,19436514-19436568,19437103-19437233,
19437382-19437486
Length = 684
Score = 28.7 bits (61), Expect = 3.7
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +2
Query: 353 WEVLWVAADSIGHSDGLP 406
W++ WVA +IGHS+ LP
Sbjct: 576 WQLWWVALRAIGHSECLP 593
>05_01_0274 -
2119122-2119775,2121457-2121570,2121895-2122203,
2123743-2123904,2124046-2124129,2124315-2124500
Length = 502
Score = 28.3 bits (60), Expect = 4.9
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = -2
Query: 497 SVPLQLPPLTRLYELSSKTLRFHHTYFLKIL--ADHHCGRCYQRPPIILPNPALVL 336
++ L PP T ++ L+ H Y L + + G RPP++LP P+ V+
Sbjct: 373 TLDLTQPPPTTTTTAAAAMLQLHRPYAFSSLPFSMYGAGGGSHRPPVVLPPPSSVV 428
>09_04_0564 + 18565583-18566449,18569662-18570123
Length = 442
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -2
Query: 422 YFLKILADHHCGRCYQRPPIILPNPA 345
Y+ L +HH C+ PP P+PA
Sbjct: 5 YYASFLKNHHRRYCFSTPPSPSPSPA 30
>09_02_0093 + 4178852-4179220,4179518-4180113,4180214-4181006
Length = 585
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = -1
Query: 540 PLEIGK---WSSRFGQVKCPSSTSTSNKTL*AFFKNSSFSS 427
PL +G+ WS R G P S S+ TL ++ + ++FSS
Sbjct: 459 PLHLGRPRGWSRRRGAESSPQSRGGSSSTLSSWGRTAAFSS 499
>11_01_0185 +
1455635-1455817,1455997-1456051,1456415-1456611,
1456850-1457206,1457355-1457424,1457527-1457672,
1457786-1457831,1457910-1457962,1458507-1458651,
1459268-1459386,1459494-1459565,1459872-1459975,
1460117-1460173,1460260-1460452,1460535-1460678,
1460825-1460927,1461444-1461592,1462674-1462728,
1464037-1464227,1464580-1464701,1464831-1464978,
1465354-1465423,1465499-1465644,1466097-1466247,
1466614-1466732,1466807-1466848,1466849-1466961,
1467496-1467552,1467642-1467834,1468040-1468183,
1468567-1468665
Length = 1280
Score = 27.5 bits (58), Expect = 8.6
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -1
Query: 378 SAATHNTSQSSFGITRLINSGLKSTSLTLMSVALIAR 268
SA T S++SF ++IN G SLT+ + L AR
Sbjct: 584 SAITWQDSENSFLRVKIINFGSDPVSLTISATGLQAR 620
>06_03_0138 +
17093196-17093325,17095704-17095804,17096224-17096292,
17096403-17097650,17097763-17097871,17099459-17099655,
17099732-17099842,17099927-17100079
Length = 705
Score = 27.5 bits (58), Expect = 8.6
Identities = 22/52 (42%), Positives = 29/52 (55%)
Frame = -1
Query: 441 SSFSSYLFSKDLGRPSLWPMLSAATHNTSQSSFGITRLINSGLKSTSLTLMS 286
SS S+ +FS L PS+ P +S SQS GI+ L+N+ K SL L S
Sbjct: 314 SSVSASVFSLGLTPPSVNPPVSTIESTMSQSQ-GISPLMNN--KPVSLPLDS 362
>06_01_0229 -
1757998-1758241,1758318-1758388,1758467-1758586,
1758685-1758805,1759264-1759418,1759507-1759644,
1759688-1759801
Length = 320
Score = 27.5 bits (58), Expect = 8.6
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +2
Query: 494 HLTCPNLEDHFPISKGI 544
H CP+L HFP+ +G+
Sbjct: 37 HQICPDLRPHFPLPRGV 53
>01_05_0005 - 16886553-16886946,16887079-16887404
Length = 239
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = -2
Query: 470 TRLYELSSKTLRFHHTYFLKILADHHCGRCYQRPPIIL 357
+R+YE S K + H Y + AD++ Y P+++
Sbjct: 152 SRIYEQSGKPISRHKGYLAMVFADYNLSVEYYHAPMLV 189
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,999,206
Number of Sequences: 37544
Number of extensions: 265081
Number of successful extensions: 634
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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