Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30912.Seq
         (597 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81462-1|CAB03840.1|  125|Caenorhabditis elegans Hypothetical pr...    60   9e-10
U41274-7|AAA82463.1| 1610|Caenorhabditis elegans Hypothetical pr...    33   0.15 
U53339-7|AAA96203.1|  345|Caenorhabditis elegans Serpentine rece...    27   7.7  

>Z81462-1|CAB03840.1|  125|Caenorhabditis elegans Hypothetical
           protein C04H5.1 protein.
          Length = 125

 Score = 60.5 bits (140), Expect = 9e-10
 Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 1/103 (0%)
 Frame = +2

Query: 242 LERCLTGYPLAINATDIKVKEVDFNPEFISRVIPKLDWEVLWVAADSIGHSDGLPRSLEN 421
           L+    GYPL +       K+++F+ +    ++ ++ +E L VAA ++  SD +PR    
Sbjct: 14  LKNVTVGYPLNLVVKQFVEKDIEFDRDNTIVMLDRIQYEALIVAAAAVNQSDRIPREKPE 73

Query: 422 KYDE-NEEFLKKAHKXXXXXXXXXGHLTCPNLEDHFPISKGIP 547
           K+DE  +E L+  H          G L CP  +  FPI  GIP
Sbjct: 74  KWDELTDEQLRVFHHLLMNIDVIDGELICPETKTVFPIRDGIP 116


>U41274-7|AAA82463.1| 1610|Caenorhabditis elegans Hypothetical protein
            T04G9.1 protein.
          Length = 1610

 Score = 33.1 bits (72), Expect = 0.15
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
 Frame = +2

Query: 257  TGYPLAINATDIKV-KEVDFNPEFISRVIPKLDWEVLWVAADSIGHSDGLPRSL 415
            T Y L +    +K+ +E+D NP    ++ PK+D   L++AADS+  + G  R L
Sbjct: 1159 TEYLLLLAEVKVKLFEEIDVNPRVREQLRPKIDLIDLYMAADSMNVAKGRLRRL 1212


>U53339-7|AAA96203.1|  345|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 13 protein.
          Length = 345

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = -3

Query: 361 YFPIQLWYYTTNKFRIKIDFFNFNVCRVNCKRIASQTPFKHFEVSILWVISFIIIFVL 188
           YF   L Y     F     FF     + NC  I ++T FK+   S++++++  ++F L
Sbjct: 63  YFISILLYAVMLCFAFGYQFFVPFFIKSNCDLIINKTLFKYIHTSVIFLLTTPMMFPL 120


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,966,720
Number of Sequences: 27780
Number of extensions: 262687
Number of successful extensions: 678
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)