Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30912.Seq
         (597 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g22270.1 68414.m02783 expressed protein contains Pfam domain ...    74   6e-14
At1g78190.1 68414.m09111 expressed protein                             69   3e-12
At2g37840.2 68415.m04646 protein kinase family protein contains ...    28   5.4  
At2g37840.1 68415.m04645 protein kinase family protein contains ...    28   5.4  
At3g18100.2 68416.m02302 myb family transcription factor (MYB4R1...    27   7.2  
At3g18100.1 68416.m02301 myb family transcription factor (MYB4R1...    27   7.2  
At1g59630.1 68414.m06706 F-box family protein-related contains w...    27   9.5  

>At1g22270.1 68414.m02783 expressed protein contains Pfam domain
           PF03966: Protein of unknown function (DUF343)
          Length = 124

 Score = 74.1 bits (174), Expect = 6e-14
 Identities = 38/99 (38%), Positives = 55/99 (55%), Gaps = 2/99 (2%)
 Frame = +2

Query: 257 TGYPLAINATDIKVKEVDFNPEFISRVIPKLDWEVLWVAADSIGHSDGLPRSLENK--YD 430
           +G+PL I A ++  KEVDFNP+FI  +  K++W+ L   A S+G+++ LP    +     
Sbjct: 18  SGFPLRIEAGNVIEKEVDFNPDFIRHMFAKIEWKALVEGARSMGYAE-LPEESPDAAVLK 76

Query: 431 ENEEFLKKAHKXXXXXXXXXGHLTCPNLEDHFPISKGIP 547
            +E FLKK H          G L CP     FP++KGIP
Sbjct: 77  SDEPFLKKLHHALLELHLEEGALVCPETGRKFPVNKGIP 115


>At1g78190.1 68414.m09111 expressed protein
          Length = 124

 Score = 68.5 bits (160), Expect = 3e-12
 Identities = 36/97 (37%), Positives = 53/97 (54%), Gaps = 2/97 (2%)
 Frame = +2

Query: 263 YPLAINATDIKVKEVDFNPEFISRVIPKLDWEVLWVAADSIGHSDGLPRSLEN--KYDEN 436
           +PL I A  + VKEVDFNP+F+  +  K+DW+ L   A S+ +++ LP +  +    + +
Sbjct: 20  FPLRIEAEKVTVKEVDFNPDFLRYMFAKIDWKALVDGARSMEYTE-LPDNAPDTTTLESD 78

Query: 437 EEFLKKAHKXXXXXXXXXGHLTCPNLEDHFPISKGIP 547
           E FL+K H          G L CP     F +SKGIP
Sbjct: 79  ETFLRKFHHALLELHLEEGSLVCPETGRKFSVSKGIP 115


>At2g37840.2 68415.m04646 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 596

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/50 (30%), Positives = 28/50 (56%)
 Frame = -1

Query: 501 VKCPSSTSTSNKTL*AFFKNSSFSSYLFSKDLGRPSLWPMLSAATHNTSQ 352
           V  PSS+S+S+K     FK+ S    LF++ +   +  P++ A +++  Q
Sbjct: 290 VDMPSSSSSSSKPYNFPFKSQSPPVELFNRSISSTAPMPIIGATSNSIGQ 339


>At2g37840.1 68415.m04645 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 733

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/50 (30%), Positives = 28/50 (56%)
 Frame = -1

Query: 501 VKCPSSTSTSNKTL*AFFKNSSFSSYLFSKDLGRPSLWPMLSAATHNTSQ 352
           V  PSS+S+S+K     FK+ S    LF++ +   +  P++ A +++  Q
Sbjct: 427 VDMPSSSSSSSKPYNFPFKSQSPPVELFNRSISSTAPMPIIGATSNSIGQ 476


>At3g18100.2 68416.m02302 myb family transcription factor (MYB4R1)
           contains Pfam profile: PF00249 Myb-like DNA-binding
           domain
          Length = 634

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +2

Query: 236 EMLERC--LTGYPLAINATDIKVKEVDFNPEFISRVIPKLDWEVL 364
           E +ER   L G    I+  +  +  ++  PE I + +PK++W+ L
Sbjct: 161 EAIERSSDLEGATYDIDTINESIGNLEITPEMIRQFLPKINWDSL 205


>At3g18100.1 68416.m02301 myb family transcription factor (MYB4R1)
           contains Pfam profile: PF00249 Myb-like DNA-binding
           domain
          Length = 847

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +2

Query: 236 EMLERC--LTGYPLAINATDIKVKEVDFNPEFISRVIPKLDWEVL 364
           E +ER   L G    I+  +  +  ++  PE I + +PK++W+ L
Sbjct: 374 EAIERSSDLEGATYDIDTINESIGNLEITPEMIRQFLPKINWDSL 418


>At1g59630.1 68414.m06706 F-box family protein-related contains weak
           hit to TIGRFAM TIGR01640 : F-box protein interaction
           domain; similar to  F-box protein family, AtFBX9
           (GI:20197985) [Arabidopsis thaliana] contains weak hit
           to TIGRFAM TIGR01640 : F-box protein interaction domain;
          Length = 239

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -1

Query: 495 CPSSTSTSNKTL*AFFKNSSFSSYLFSKDLGRPSLW 388
           C ++ STSN  + + +K   FS    SK  G  ++W
Sbjct: 107 CKANKSTSNTRILSIYKGDRFSVLQQSKRTGEINIW 142


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,959,663
Number of Sequences: 28952
Number of extensions: 234125
Number of successful extensions: 557
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)