Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30911.Seq
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27E2.05 |cdc1|mis1|DNA polymerase delta small subunit Cdc1|S...    27   1.6  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    27   2.1  
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar...    26   4.8  
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    25   8.4  
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual          25   8.4  

>SPAC27E2.05 |cdc1|mis1|DNA polymerase delta small subunit
           Cdc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 462

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 26/99 (26%), Positives = 40/99 (40%), Gaps = 4/99 (4%)
 Frame = -3

Query: 299 CRGVDVLRAMGXSQXQFSLMIEPPQKYVLFTTNDTWWG*SSMKASCPPTILSSFTMGSLR 120
           C  +DV    G      +++ + P    L T +  W G SS++    PT LS      L 
Sbjct: 283 CSSIDVTLMPGPYDYSSTILPQQPLHPALLTKSKVWLG-SSLQTVTNPTWLSLGNHFVLA 341

Query: 119 NSSK-VGKLEKSRPYAS---CEYSRVNPKKITKCSEDSI 15
            S + +  L K  P  S   C  + +    IT  S D++
Sbjct: 342 TSGQNINDLRKYHPKKSSLQCMENTLLWNHITPTSPDTL 380


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -1

Query: 169 PPVPPRFCHRLPWAP 125
           PPVPP  CH  P  P
Sbjct: 880 PPVPPALCHAFPPGP 894


>SPBC19F5.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = +1

Query: 43  FFGLTL-LYSQLAYGLDFSNFP--TLEEFLKEPMVNDDRI 153
           F G+   LY   A+GL F N+P   L  FL+  M  + R+
Sbjct: 546 FLGIVASLYYCFAHGLQFINWPRLLLPSFLRSDMTPEGRV 585


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +1

Query: 85  LDFSNFPTLEEFLKEPMVNDDRIVGGQEAFIDDYPHQVSF-VVNNT 219
           ++    PT++E+L+E   N+D IV      ++ +P  VSF  + NT
Sbjct: 403 MESEKIPTIDEYLQE-YSNEDEIV---LQVLESFPAAVSFSTITNT 444


>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 674

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 269 PLLSERRPLDSGLKRWKFMAEEXYYHSH*KSDS 367
           P L+E+   D+GLK  K + +  Y H    S+S
Sbjct: 588 PFLNEKHFYDAGLKDLKILVKNEYPHVEQFSES 620


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,244,775
Number of Sequences: 5004
Number of extensions: 42186
Number of successful extensions: 117
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)