Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30911.Seq
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0161 - 14270233-14271747                                         29   2.1  
12_02_0991 + 25079293-25079925,25080221-25081116,25081721-25082003     29   3.7  
09_04_0279 - 16349156-16349788,16352409-16353344                       28   6.5  
01_06_0060 + 26068792-26069363,26069525-26070209                       28   6.5  
11_06_0387 + 23038490-23038662,23039246-23039303,23039471-230395...    27   8.6  
03_06_0290 + 32878040-32880193,32881607-32881720                       27   8.6  

>11_04_0161 - 14270233-14271747
          Length = 504

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 463 GYLQWIEAXRGXTXVWSAGGDVLSNEPRRLPE 558
           GY+QW++  R  + V+ A G +    PR+L E
Sbjct: 283 GYMQWLDKQRDASVVYVAFGSLAVLSPRQLEE 314


>12_02_0991 + 25079293-25079925,25080221-25081116,25081721-25082003
          Length = 603

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = -1

Query: 193 GGGNHR*RPPVPPRFCHR--LPWAP*GTLPKL 104
           GGGNH+  PP PP   H+   P AP    P +
Sbjct: 49  GGGNHKPPPPTPPPQQHKTTTPSAPPSRAPSV 80


>09_04_0279 - 16349156-16349788,16352409-16353344
          Length = 522

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
 Frame = -2

Query: 282 SESNGLQSIXVLADDRAAAKI----RIVHHKRYLVGVIIDEGLLSPHDSVIVYHGLLEEL 115
           S S G ++I V+ D  + A +    R+V  KRY+ G ++ E   S   ++  +  LLEEL
Sbjct: 165 SSSGGRRAI-VIKDYLSTASLNMITRMVMGKRYVQGEVVHEEPGSARTTLAQFKELLEEL 223

Query: 114 F 112
           F
Sbjct: 224 F 224


>01_06_0060 + 26068792-26069363,26069525-26070209
          Length = 418

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = +3

Query: 222 FLRRLDHQRELXLTX--AHCSQNVDPSTVVLRGGSSWRK 332
           FL   + +REL +    AH ++ + PS +  RG SSWR+
Sbjct: 137 FLFAANGRRELVVVDLSAHAARRLPPSPLGPRGTSSWRR 175


>11_06_0387 +
           23038490-23038662,23039246-23039303,23039471-23039551,
           23039640-23039675,23039821-23040060,23040155-23040293,
           23041417-23041889
          Length = 399

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 25/61 (40%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
 Frame = -3

Query: 182 SSMKASCPPTILSSFTMG--SLRNSSKVGKLEKSR-PYASCEYSRVNPKKI-TKCSEDSI 15
           S +K S PP ILS  T G  S  ++  +GK E  R  Y    YS V+   I   CSED  
Sbjct: 151 SVLKMSQPPRILSWMTRGIASGLDTLFIGKFEAQRAEYWDTLYSSVHVGPILIFCSEDDE 210

Query: 14  L 12
           L
Sbjct: 211 L 211


>03_06_0290 + 32878040-32880193,32881607-32881720
          Length = 755

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/30 (40%), Positives = 22/30 (73%)
 Frame = -2

Query: 195 LVGVIIDEGLLSPHDSVIVYHGLLEELFQS 106
           L+ V+  +G++SP  S I+ +GL++E F+S
Sbjct: 642 LLTVVNMDGMMSPRISNIIIYGLIKEGFKS 671


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,676,035
Number of Sequences: 37544
Number of extensions: 313328
Number of successful extensions: 675
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)